HL_8AM9_092

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGACGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AM9_092 not in the Motif Atlas

Homologous match to HL_5J7L_190

Geometric discrepancy: 0.0809

The information below is about HL_5J7L_190

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8AM9|1|a|U|2356
8AM9|1|a|G|2357
8AM9|1|a|A|2358
8AM9|1|a|C|2359
8AM9|1|a|G|2360
8AM9|1|a|G|2361

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain k

50S ribosomal protein L15

Chain v

50S ribosomal protein L27