HL_8AM9_102

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUUA

Length

4 nucleotides

Bulged bases

8AM9|1|a|U|2797

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AM9_102 not in the Motif Atlas

Geometric match to HL_6U8D_003

Geometric discrepancy: 0.2538

The information below is about HL_6U8D_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.3

Basepair signature

cWW-F

Number of instances in this motif group

8

Unit IDs

8AM9|1|a|U|2796
8AM9|1|a|U|2797
8AM9|1|a|U|2798
8AM9|1|a|A|2799

Current chains

Chain a

23S ribosomal RNA

Nearby chains