HL_8AM9_109
3D structure
- PDB id
- 8AM9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- (PSU)GCUAACG
- Length
- 8 nucleotides
- Bulged bases
- 8AM9|1|a|U|958, 8AM9|1|a|C|961
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8AM9_109 not in the Motif Atlas
- Homologous match to HL_5J7L_211
- Geometric discrepancy: 0.2105
- The information below is about HL_5J7L_211
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.8
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 352
Unit IDs
8AM9|1|a|PSU|955
8AM9|1|a|G|956
8AM9|1|a|C|957
8AM9|1|a|U|958
8AM9|1|a|A|959
8AM9|1|a|A|960
8AM9|1|a|C|961
8AM9|1|a|G|962
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain l
- 50S ribosomal protein L16
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