HL_8ANA_047

3D structure

PDB id

8ANA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

8ANA|1|a|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ANA_047 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0541

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8ANA|1|a|G|1949
8ANA|1|a|G|1950
8ANA|1|a|U|1951
8ANA|1|a|A|1952
8ANA|1|a|A|1953
8ANA|1|a|G|1954
8ANA|1|a|U|1955
8ANA|1|a|U|1956
8ANA|1|a|C|1957

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain j

50S ribosomal protein L14