HL_8ANA_048

3D structure

PDB id

8ANA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

8ANA|1|a|A|2030, 8ANA|1|a|A|2031, 8ANA|1|a|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ANA_048 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1073

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8ANA|1|a|G|2027
8ANA|1|a|U|2028
8ANA|1|a|G|2029
8ANA|1|a|A|2030
8ANA|1|a|A|2031
8ANA|1|a|G|2032
8ANA|1|a|A|2033
8ANA|1|a|U|2034
8ANA|1|a|G|2035
8ANA|1|a|C|2036

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain q

50S ribosomal protein L21

Chain z

50S ribosomal protein L32