HL_8ANY_061

3D structure

PDB id

8ANY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

UUAAACAAA

Length

9 nucleotides

Bulged bases

8ANY|1|Aw|A|16, 8ANY|1|Aw|C|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ANY_061 not in the Motif Atlas

Geometric match to HL_1F7U_001

Geometric discrepancy: 0.2881

The information below is about HL_1F7U_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55043.2

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

5

Unit IDs

8ANY|1|Aw|U|12
8ANY|1|Aw|U|13
8ANY|1|Aw|A|14
8ANY|1|Aw|A|15
8ANY|1|Aw|A|16
8ANY|1|Aw|C|20
8ANY|1|Aw|A|21
8ANY|1|Aw|A|22
8ANY|1|Aw|A|23

Current chains

Chain Aw

A/A-tRNA

Nearby chains

Chain 8

39S ribosomal protein L40, mitochondrial

Chain A

Large subunit ribosomal RNA; LSU rRNA