3D structure

PDB id
8AP4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Escherischia coli heat shock protein Hsp15 in complex with ribosomal 50S subunits bearing peptidyl-tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GUGAAAAGC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8AP4_033 not in the Motif Atlas
Homologous match to HL_5J7L_165
Geometric discrepancy: 0.1147
The information below is about HL_5J7L_165
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.8
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
140

Unit IDs

8AP4|1|a|G|1281
8AP4|1|a|U|1282
8AP4|1|a|G|1283
8AP4|1|a|A|1284
8AP4|1|a|A|1285
8AP4|1|a|A|1286
8AP4|1|a|A|1287
8AP4|1|a|G|1288
8AP4|1|a|C|1289

Current chains

Chain a
23S rRNA

Nearby chains

Chain m
50S ribosomal protein L17
Chain r
50S ribosomal protein L22
Chain z
50S ribosomal protein L32

Coloring options:


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