HL_8AYE_045

3D structure

PDB id

8AYE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to thermorubin and fMet-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.96 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

8AYE|1|a|G|329, 8AYE|1|a|A|330, 8AYE|1|a|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AYE_045 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0727

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8AYE|1|a|G|327
8AYE|1|a|U|328
8AYE|1|a|G|329
8AYE|1|a|A|330
8AYE|1|a|C|331
8AYE|1|a|A|332
8AYE|1|a|G|333
8AYE|1|a|C|334
8AYE|1|a|C|335

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24