HL_8AYE_074

3D structure

PDB id

8AYE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to thermorubin and fMet-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.96 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

8AYE|1|a|U|1729, 8AYE|1|a|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AYE_074 not in the Motif Atlas

Geometric match to HL_7A0S_023

Geometric discrepancy: 0.3449

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

8AYE|1|a|C|1727
8AYE|1|a|C|1728
8AYE|1|a|U|1729
8AYE|1|a|C|1730
8AYE|1|a|G|1731
8AYE|1|a|C|1732
8AYE|1|a|G|1733

Current chains

Chain a

23S rRNA

Nearby chains