HL_8B0X_044

3D structure

PDB id

8B0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 70S ribosome in the unrotated state (P and E, tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8B0X|1|a|G|386, 8B0X|1|a|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B0X_044 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0556

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8B0X|1|a|A|382
8B0X|1|a|C|383
8B0X|1|a|A|384
8B0X|1|a|C|385
8B0X|1|a|G|386
8B0X|1|a|U|387
8B0X|1|a|G|388
8B0X|1|a|G|389
8B0X|1|a|U|390
8B0X|1|a|A|391
8B0X|1|a|U|392

Current chains

Chain a

23S rRNA

Nearby chains

Chain w

50S ribosomal protein L28