8B0X Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8B0X_001 | 1/A/12:22 | No text annotation HL_31940.1 | ||
| HL_8B0X_002 | 1/A/158:163 | GNRA HL_34789.1 | ||
| HL_8B0X_003 | 1/A/186:191 | GNRA HL_34789.1 | ||
| HL_8B0X_005 | 1/A/259:267 | GNRA related HL_36455.1 | ||
| HL_8B0X_006 | 1/A/296:301 | GNRA HL_34789.1 | ||
| HL_8B0X_007 | 1/A/320:333 | No text annotation HL_39665.1 | ||
| HL_8B0X_008 | 1/A/342:347 | UNCG HL_61337.1 | ||
| HL_8B0X_009 | 1/A/379:384 | GNRA HL_34789.1 | ||
| HL_8B0X_010 | 1/A/419:424 | UNCG HL_61337.1 | ||
| HL_8B0X_011 | 1/A/462:470 | GNRA wlth extra near cWW HL_98423.1 | ||
| HL_8B0X_099 | 1/A/522:527 | GNRA variation HL_34789.1 | ||
| HL_8B0X_013 | 1/A/617:623 | GNRA-like with tWH HL_92337.1 | ||
| HL_8B0X_014 | 1/A/689:698 | No text annotation HL_38491.1 | ||
| HL_8B0X_015 | 1/A/726:731 | GNRA HL_34789.1 | ||
| HL_8B0X_016 | 1/A/786:796 | No text annotation HL_38491.1 | ||
| HL_8B0X_017 | 1/A/862:867 | GNRA HL_34789.1 | ||
| HL_8B0X_018 | 1/A/897:902 | GNRA HL_34789.1 | ||
| HL_8B0X_019 | 1/A/963:972 | No text annotation HL_97521.1 | ||
| HL_8B0X_020 | 1/A/1012:1017 | GNRA HL_34789.1 | ||
| HL_8B0X_021 | 1/A/1076:1081 | GNRA HL_34789.1 | ||
| HL_8B0X_022 | 1/A/1089:1096 | T-loop related HL_63894.1 | ||
| HL_8B0X_023 | 1/A/1134:1140 | No text annotation HL_13184.1 | ||
| HL_8B0X_024 | 1/A/1165:1171 | GNRA HL_34789.1 | ||
| HL_8B0X_025 | 1/A/1265:1270 | GNRA HL_34789.1 | ||
| HL_8B0X_026 | 1/A/1314:1323 | T-loop with 3 stacked bulged bases HL_93658.1 | ||
| HL_8B0X_027 | 1/A/1356:1366 | No text annotation HL_86432.1 | ||
| HL_8B0X_028 | 1/A/1449:1454 | UNCG HL_61337.1 | ||
| HL_8B0X_029 | 1/A/1515:1520 | GNRA HL_34789.1 | ||
| HL_8B0X_030 | 1/Z/13:22 | tRNA D-loop HL_63054.1 | ||
| HL_8B0X_031 | 1/Z/31:39 | tRNA anticodon loop HL_81376.1 | ||
| HL_8B0X_032 | 1/Z/53:61 | T-loop with 2 stacked bulged bases HL_33597.1 | ||
| HL_8B0X_033 | 1/a/59:68 | No text annotation HL_35677.4 | ||
| HL_8B0X_034 | 1/a/87:95 | No text annotation HL_00911.1 | ||
| HL_8B0X_035 | 1/a/123:128 | No text annotation HL_82710.3 | ||
| HL_8B0X_036 | 1/a/137:142 | UNCG HL_61337.1 | ||
| HL_8B0X_037 | 1/a/158:168 | No text annotation HL_50765.1 | ||
| HL_8B0X_038 | 1/a/194:201 | No text annotation HL_48677.1 | ||
| HL_8B0X_039 | 1/a/225:230 | No text annotation HL_41169.1 | ||
| HL_8B0X_040 | 1/a/246:252 | No text annotation HL_76371.1 | ||
| HL_8B0X_041 | 1/a/305:312 | T-loop with 2 stacked bulged bases HL_13999.1 | ||
| HL_8B0X_042 | 1/a/319:323 | No text annotation HL_75660.6 | ||
| HL_8B0X_043 | 1/a/327:335 | T-loop with unstacked turn HL_27670.3 | ||
| HL_8B0X_044 | 1/a/382:392 | No text annotation HL_91503.8 | ||
| HL_8B0X_045 | 1/a/410:417 | Pseudoknot geometry HL_30680.4 | ||
| HL_8B0X_046 | 1/a/462:467 | GNRA HL_34789.1 | ||
| HL_8B0X_047 | 1/a/487:493 | GNRA HL_34789.1 | ||
| HL_8B0X_048 | 1/a/568:577 | T-loop with 2 stacked bulged bases HL_33597.1 | ||
| HL_8B0X_049 | 1/a/613:619 | GNRA HL_34789.1 | ||
| HL_8B0X_050 | 1/a/631:636 | GNRA HL_34789.1 | ||
| HL_8B0X_051 | 1/a/643:649 | No text annotation HL_92337.1 | ||
| HL_8B0X_052 | 1/a/714:721 | GNRA wlth tandem sheared HL_98423.1 | ||
| HL_8B0X_053 | 1/a/746:755 | No text annotation HL_50204.1 | ||
| HL_8B0X_054 | 1/a/781:787 | No text annotation HL_92935.1 | ||
| HL_8B0X_055 | 1/a/828:833 | No text annotation HL_27530.1 | ||
| HL_8B0X_056 | 1/a/887:893 | No text annotation HL_67772.1 | ||
| HL_8B0X_100 | 1/a/957:964 | GNRA HL_34789.1 | ||
| HL_8B0X_058 | 1/a/980:987 | No text annotation HL_47171.1 | ||
| HL_8B0X_059 | 1/a/1224:1229 | GNRA HL_34789.1 | ||
| HL_8B0X_060 | 1/a/1283:1291 | T-loop with 2 stacked bulged bases HL_33597.1 | ||
| HL_8B0X_061 | 1/a/1326:1332 | Pseudoknot geometry with 3' bulge HL_49081.1 | ||
| HL_8B0X_062 | 1/a/1365:1370 | GNRA HL_34789.1 | ||
| HL_8B0X_063 | 1/a/1391:1400 | No text annotation HL_77449.1 | ||
| HL_8B0X_064 | 1/a/1453:1461 | Mini UNCG with extended bulge HL_00557.1 | ||
| HL_8B0X_065 | 1/a/1494:1500 | Pseudoknot geometry with 3' bulge HL_49081.1 | ||
| HL_8B0X_066 | 1/a/1535:1540 | UNCG HL_13184.1 | ||
| HL_8B0X_067 | 1/a/1567:1570 | Mini UNCG HL_90436.1 | ||
| HL_8B0X_068 | 1/a/1614:1621 | No text annotation HL_28592.1 | ||
| HL_8B0X_069 | 1/a/1632:1638 | GNRA HL_34789.1 | ||
| HL_8B0X_070 | 1/a/1693:1698 | UNCG HL_61337.1 | ||
| HL_8B0X_071 | 1/a/1730:1733 | Mini UNCG HL_90436.1 | ||
| HL_8B0X_072 | 1/a/1754:1758 | No text annotation HL_80709.4 | ||
| HL_8B0X_073 | 1/a/1779:1789 | No text annotation HL_87681.1 | ||
| HL_8B0X_074 | 1/a/1808:1813 | GNRA related HL_37569.1 | ||
| HL_8B0X_076 | 1/a/1914:1924 | No text annotation HL_82185.1 | ||
| HL_8B0X_077 | 1/a/1953:1961 | No text annotation HL_61418.1 | ||
| HL_8B0X_078 | 1/a/2031:2040 | No text annotation HL_78372.1 | ||
| HL_8B0X_079 | 1/a/2213:2219 | No text annotation HL_81964.1 | ||
| HL_8B0X_080 | 1/a/2252:2260 | No text annotation HL_11974.1 | ||
| HL_8B0X_081 | 1/a/2268:2280 | No text annotation HL_02042.1 | ||
| HL_8B0X_101 | 1/a/2308:2316 | No text annotation HL_02452.1 | ||
| HL_8B0X_083 | 1/a/2328:2335 | Pseudoknot geometry HL_52651.1 | ||
| HL_8B0X_084 | 1/a/2360:2365 | GNRA HL_34789.1 | ||
| HL_8B0X_085 | 1/a/2378:2383 | GNRA HL_34789.1 | ||
| HL_8B0X_086 | 1/a/2408:2417 | No text annotation HL_51853.1 | ||
| HL_8B0X_087 | 1/a/2475:2483 | No text annotation HL_52011.1 | ||
| HL_8B0X_088 | 1/a/2532:2539 | GNRA variation HL_46665.1 | ||
| HL_8B0X_089 | 1/a/2555:2561 | No text annotation HL_48677.1 | ||
| HL_8B0X_090 | 1/a/2598:2603 | GNRA HL_34789.1 | ||
| HL_8B0X_091 | 1/a/2662:2667 | GNRA HL_34789.1 | ||
| HL_8B0X_092 | 1/a/2705:2710 | Ribsomal LSU H95 HL_12125.1 | ||
| HL_8B0X_093 | 1/a/2749:2763 | No text annotation HL_53269.1 | ||
| HL_8B0X_094 | 1/a/2800:2803 | Mini UNCG HL_90436.1 | ||
| HL_8B0X_095 | 1/a/2823:2831 | No text annotation HL_37889.1 | ||
| HL_8B0X_096 | 1/a/2860:2865 | GNRA HL_34789.1 | ||
| HL_8B0X_102 | 1/b/34:48 | No text annotation HL_97756.3 | ||
| HL_8B0X_097 | 1/b/38:44 | No text annotation HL_59381.1 | ||
| HL_8B0X_098 | 1/b/86:90 | Mini UNCG HL_90436.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8B0X_004 | No text annotation | ||
| HL_8B0X_012 | No text annotation | ||
| HL_8B0X_057 | No text annotation | ||
| HL_8B0X_075 | No text annotation | ||
| HL_8B0X_082 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8B0X_001 | 1/A/30:32, 1/A/552:553 | Single bulged G IL_28408.1 | ||
| IL_8B0X_002 | 1/A/44:45, 1/A/396:398 | Single bulged A IL_14190.1 | ||
| IL_8B0X_003 | 1/A/47:52, 1/A/359:361 | No text annotation IL_68149.1 | ||
| IL_8B0X_004 | 1/A/54:56, 1/A/356:357 | Minor groove platform IL_34520.1 | ||
| IL_8B0X_005 | 1/A/63:66, 1/A/103:104 | Multiple bulged bases IL_71421.1 | ||
| IL_8B0X_006 | 1/A/67:69, 1/A/99:102 | Minor groove platform with extra cWW IL_82096.1 | ||
| IL_8B0X_007 | 1/A/70:73, 1/A/97:98 | Minor groove platform IL_87975.1 | ||
| IL_8B0X_008 | 1/A/75:76, 1/A/93:95 | Single bulged G IL_28408.1 | ||
| IL_8B0X_009 | 1/A/128:131, 1/A/231:233 | Isolated non-canonical cWW pair IL_30229.1 | ||
| IL_8B0X_010 | 1/A/132:136, 1/A/227:230 | Minor groove platform related IL_60988.1 | ||
| IL_8B0X_011 | 1/A/144:146, 1/A/176:178 | Isolated cWH basepair IL_10892.1 | ||
| IL_8B0X_012 | 1/A/147:153, 1/A/168:175 | tWH-tWH-tHW-tHW IL_24485.1 | ||
| IL_8B0X_013 | 1/A/242:247, 1/A/277:284 | Kink-turn with non-sequential stacking IL_46174.4 | ||
| IL_8B0X_014 | 1/A/249:252, 1/A/274:275 | No text annotation IL_22002.1 | ||
| IL_8B0X_015 | 1/A/292:293, 1/A/304:308 | C-loop IL_06671.1 | ||
| IL_8B0X_016 | 1/A/367:369, 1/A/392:393 | Single bulged U IL_97561.1 | ||
| IL_8B0X_017 | 1/A/371:375, 1/A/389:390 | C-loop IL_26900.1 | ||
| IL_8B0X_018 | 1/A/375:376, 1/A/387:389 | Single bulged G IL_28408.1 | ||
| IL_8B0X_019 | 1/A/409:416, 1/A/427:433 | No text annotation IL_62329.1 | ||
| IL_8B0X_020 | 1/A/440:442, 1/A/492:497 | No text annotation IL_02111.1 | ||
| IL_8B0X_021 | 1/A/446:450, 1/A/483:488 | tSH-tHW-tWW IL_82100.1 | ||
| IL_8B0X_022 | 1/A/450:455, 1/A/477:483 | No text annotation | homologous IL_5J7L_023 NA | |
| IL_8B0X_023 | 1/A/504:511, 1/A/540:541 | SSU/LSU pseudoknot IL_11411.1 | ||
| IL_8B0X_024 | 1/A/515:521, 1/A/528:536 | Kink-turn related IL_52042.1 | ||
| IL_8B0X_025 | 1/A/569:575, 1/A/880:881 | No text annotation IL_20847.1 | ||
| IL_8B0X_026 | 1/A/580:584, 1/A/757:761 | tSH-tHW-tHS IL_05821.1 | ||
| IL_8B0X_027 | 1/A/594:596, 1/A/644:645 | Major groove platform IL_48076.7 | ||
| IL_8B0X_028 | 1/A/597:598, 1/A/640:643 | Major groove minor groove platform; mini C-loop IL_73108.1 | ||
| IL_8B0X_029 | 1/A/605:612, 1/A/628:633 | No text annotation IL_04211.1 | ||
| IL_8B0X_030 | 1/A/654:655, 1/A/751:754 | Major groove platform; stack outside cWW IL_74641.1 | ||
| IL_8B0X_031 | 1/A/659:660, 1/A/745:747 | Single stack bend IL_15011.1 | ||
| IL_8B0X_032 | 1/A/662:666, 1/A/740:743 | Tandem non-canonical cWW pairs IL_15225.1 | ||
| IL_8B0X_176 | 1/A/673:677, 1/A/713:717 | Triple non-canonical cWW pairs IL_71154.1 | ||
| IL_8B0X_034 | 1/A/684:688, 1/A/699:706 | Kink-turn IL_54465.1 | ||
| IL_8B0X_035 | 1/A/774:778, 1/A/804:805 | Left turn IL_29346.3 | ||
| IL_8B0X_036 | 1/A/779:783, 1/A/799:803 | tSH-tHW-tHS IL_05821.1 | ||
| IL_8B0X_037 | 1/A/887:894, 1/A/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge IL_84044.1 | ||
| IL_8B0X_038 | 1/A/922:923, 1/A/1393:1395 | Single bulged A IL_14190.1 | ||
| IL_8B0X_039 | 1/A/925:927, 1/A/1390:1391 | Single bulged G IL_28408.1 | ||
| IL_8B0X_040 | 1/A/933:935, 1/A/1380:1384 | Minor groove platform IL_61370.1 | ||
| IL_8B0X_041 | 1/A/953:954, 1/A/1226:1228 | No text annotation IL_34520.1 | ||
| IL_8B0X_042 | 1/A/993:997, 1/A/1044:1045 | Minor groove platform IL_61370.1 | ||
| IL_8B0X_043 | 1/A/998:999, 1/A/1041:1043 | Single stack bend IL_15011.1 | ||
| IL_8B0X_044 | 1/A/1048:1050, 1/A/1208:1209 | Single bulged U IL_97561.1 | ||
| IL_8B0X_046 | 1/A/1052:1056, 1/A/1204:1206 | Isolated cWS basepair IL_82453.1 | ||
| IL_8B0X_047 | 1/A/1057:1058, 1/A/1199:1203 | Minor groove platform IL_24264.1 | ||
| IL_8B0X_048 | 1/A/1060:1061, 1/A/1195:1197 | Single bulged A IL_14190.1 | ||
| IL_8B0X_049 | 1/A/1061:1063, 1/A/1193:1195 | Isolated non-canonical cWW pair IL_68118.1 | ||
| IL_8B0X_050 | 1/A/1124:1128, 1/A/1144:1149 | No text annotation IL_38603.1 | ||
| IL_8B0X_051 | 1/A/1129:1132, 1/A/1142:1143 | Minor groove platform IL_87975.1 | ||
| IL_8B0X_052 | 1/A/1158:1161, 1/A/1175:1181 | No text annotation IL_32376.1 | ||
| IL_8B0X_053 | 1/A/1247:1253, 1/A/1284:1290 | No text annotation IL_12056.1 | ||
| IL_8B0X_054 | 1/A/1255:1258, 1/A/1277:1282 | 180 degree turn IL_08849.1 | ||
| IL_8B0X_055 | 1/A/1259:1263, 1/A/1272:1276 | Double sheared with non-canonical cWW IL_87767.1 | ||
| IL_8B0X_056 | 1/A/1303:1308, 1/A/1329:1334 | No text annotation IL_57885.1 | ||
| IL_8B0X_057 | 1/A/1399:1401, 1/A/1501:1504 | No text annotation IL_18228.1 | ||
| IL_8B0X_058 | 1/A/1401:1404, 1/A/1497:1501 | No text annotation IL_25873.1 | ||
| IL_8B0X_177 | 1/A/1405:1407, 1/A/1494:1496 | Isolated non-canonical cWW pair IL_01003.1 | ||
| IL_8B0X_178 | 1/A/1407:1409, 1/A/1491:1494 | No text annotation IL_75527.1 | ||
| IL_8B0X_060 | 1/A/1412:1414, 1/A/1486:1488 | Isolated non-canonical cWW pair IL_01003.1 | ||
| IL_8B0X_061 | 1/A/1416:1419, 1/A/1481:1484 | Double sheared IL_58355.1 | ||
| IL_8B0X_062 | 1/A/1430:1435, 1/A/1466:1470 | Triple sheared related IL_67427.1 | ||
| IL_8B0X_063 | 1/A/1440:1442, 1/A/1460:1461 | Single bulged A IL_34520.1 | ||
| IL_8B0X_064 | 1/A/1445:1448, 1/A/1455:1457 | No text annotation IL_05502.1 | ||
| IL_8B0X_065 | 1/a/24:30, 1/a/510:516 | Triple sheared with non-canonical cWW IL_22311.1 | ||
| IL_8B0X_066 | 1/a/36:37, 1/a/442:444 | Single bulged A IL_14190.1 | ||
| IL_8B0X_067 | 1/a/43:44, 1/a/434:436 | Minor groove platform IL_34520.1 | ||
| IL_8B0X_068 | 1/a/81:85, 1/a/97:105 | No text annotation | homologous IL_5J7L_248 NA | |
| IL_8B0X_069 | 1/a/183:184, 1/a/212:214 | Single stack bend IL_15011.1 | ||
| IL_8B0X_070 | 1/a/188:194, 1/a/201:208 | 8x7 Sarcin-Ricin; G-bulge IL_62167.1 | ||
| IL_8B0X_071 | 1/a/239:245, 1/a/253:258 | 7x6 Sarcin-Ricin; G-bulge IL_02666.1 | ||
| IL_8B0X_072 | 1/a/269:271, 1/a/366:370 | No text annotation | homologous IL_5J7L_252 NA | |
| IL_8B0X_073 | 1/a/274:281, 1/a/359:363 | No text annotation IL_22028.1 | ||
| IL_8B0X_074 | 1/a/293:295, 1/a/343:347 | No text annotation IL_76658.1 | ||
| IL_8B0X_075 | 1/a/481:484, 1/a/496:509 | No text annotation IL_44923.1 | ||
| IL_8B0X_076 | 1/a/536:539, 1/a/556:559 | Double sheared IL_58355.1 | ||
| IL_8B0X_077 | 1/a/566:568, 1/a/577:579 | Isolated non-canonical cWW pair IL_71625.1 | ||
| IL_8B0X_078 | 1/a/608:612, 1/a/620:624 | AAA cross-strand stack IL_66798.3 | ||
| IL_8B0X_079 | 1/a/674:676, 1/a/808:810 | No text annotation IL_01003.1 | ||
| IL_8B0X_080 | 1/a/676:680, 1/a/801:808 | tHW-tHW cross-strand stack IL_73855.1 | ||
| IL_8B0X_081 | 1/a/699:700, 1/a/765:767 | Single bulged A IL_14190.1 | ||
| IL_8B0X_082 | 1/a/704:705, 1/a/730:732 | Single bulged G IL_28408.1 | ||
| IL_8B0X_083 | 1/a/705:709, 1/a/726:730 | Triple sheared IL_15190.1 | ||
| IL_8B0X_084 | 1/a/740:742, 1/a/759:760 | Major groove platform IL_48076.7 | ||
| IL_8B0X_085 | 1/a/777:779, 1/a/789:793 | Multiple bulged bases IL_89509.1 | ||
| IL_8B0X_086 | 1/a/839:840, 1/a/942:944 | Single stack bend IL_15011.1 | ||
| IL_8B0X_087 | 1/a/846:849, 1/a/935:936 | 90 degree turn IL_79144.1 | ||
| IL_8B0X_179 | 1/a/846:850, 1/a/932:936 | No text annotation IL_01742.1 | ||
| IL_8B0X_088 | 1/a/849:850, 1/a/932:935 | Stack outside cWW IL_36175.1 | ||
| IL_8B0X_089 | 1/a/852:853, 1/a/928:930 | Single stack bend IL_15011.1 | ||
| IL_8B0X_090 | 1/a/858:864, 1/a/917:923 | 7x7 Sarcin-Ricin with intercalated A; G-bulge IL_94128.1 | ||
| IL_8B0X_091 | 1/a/864:865, 1/a/915:917 | Single bulged G IL_28408.1 | ||
| IL_8B0X_092 | 1/a/866:870, 1/a/911:914 | C-loop with bulged stacked A's IL_16301.1 | ||
| IL_8B0X_093 | 1/a/872:874, 1/a/907:909 | Isolated non-canonical cWW pair IL_01003.1 | ||
| IL_8B0X_094 | 1/a/877:881, 1/a/900:904 | Double sheared with non-canonical cWW IL_87767.1 | ||
| IL_8B0X_095 | 1/a/882:883, 1/a/897:899 | No text annotation IL_14190.1 | ||
| IL_8B0X_096 | 1/a/996:998, 1/a/1161:1162 | Single bulged C IL_05642.1 | ||
| IL_8B0X_097 | 1/a/1000:1004, 1/a/1155:1159 | UAA/GAN IL_08938.1 | ||
| IL_8B0X_098 | 1/a/1006:1013, 1/a/1152:1153 | SSU/LSU pseudoknot IL_11411.1 | ||
| IL_8B0X_099 | 1/a/1013:1015, 1/a/1151:1152 | Single bulged U IL_97561.1 | ||
| IL_8B0X_100 | 1/a/1020:1026, 1/a/1142:1146 | Kink-turn related IL_57188.6 | ||
| IL_8B0X_101 | 1/a/1026:1032, 1/a/1126:1142 | No text annotation IL_50715.4 | ||
| IL_8B0X_102 | 1/a/1033:1036, 1/a/1123:1125 | Isolated non-canonical cWW pair IL_30229.1 | ||
| IL_8B0X_103 | 1/a/1040:1043, 1/a/1116:1119 | Tandem non-canonical cWW pairs IL_15225.1 | ||
| IL_8B0X_104 | 1/a/1045:1053, 1/a/1110:1114 | Kink-turn IL_99692.3 | ||
| IL_8B0X_105 | 1/a/1198:1200, 1/a/1249:1252 | Isolated cWS basepair IL_42997.4 | ||
| IL_8B0X_106 | 1/a/1204:1208, 1/a/1242:1245 | No text annotation | homologous IL_5J7L_287 NA | |
| IL_8B0X_107 | 1/a/1210:1217, 1/a/1236:1240 | Kink-turn IL_90775.1 | ||
| IL_8B0X_108 | 1/a/1264:1271, 1/a/2015:2021 | 8x7 Sarcin-Ricin; G-bulge IL_62167.1 | ||
| IL_8B0X_109 | 1/a/1312:1315, 1/a/1605:1606 | Major groove platform; stack outside cWW IL_74641.1 | ||
| IL_8B0X_110 | 1/a/1321:1325, 1/a/1333:1335 | C-loop IL_63596.12 | ||
| IL_8B0X_111 | 1/a/1353:1357, 1/a/1378:1382 | UAA/GAN IL_89021.3 | ||
| IL_8B0X_112 | 1/a/1359:1363, 1/a/1372:1376 | tSH-tHW-tHS IL_05821.1 | ||
| IL_8B0X_113 | 1/a/1417:1418, 1/a/1584:1589 | No text annotation | homologous IL_5J7L_294 NA | |
| IL_8B0X_114 | 1/a/1419:1423, 1/a/1579:1583 | UAA/GAN IL_08938.1 | ||
| IL_8B0X_115 | 1/a/1434:1437, 1/a/1559:1563 | Tandem non-canonical cWW pairs IL_15225.1 | ||
| IL_8B0X_116 | 1/a/1439:1442, 1/a/1553:1557 | tSH-tHW IL_74317.1 | ||
| IL_8B0X_117 | 1/a/1452:1453, 1/a/1461:1463 | Single bulged U IL_97561.1 | ||
| IL_8B0X_118 | 1/a/1470:1473, 1/a/1522:1526 | No text annotation IL_68574.5 | ||
| IL_8B0X_119 | 1/a/1476:1480, 1/a/1515:1519 | tSH-tHW-tHS IL_38862.5 | ||
| IL_8B0X_120 | 1/a/1483:1484, 1/a/1509:1512 | 180 degree turn IL_52564.1 | ||
| IL_8B0X_121 | 1/a/1491:1493, 1/a/1501:1502 | Single bulged A IL_14190.1 | ||
| IL_8B0X_122 | 1/a/1528:1531, 1/a/1544:1548 | UAA/GAN variation IL_45790.1 | ||
| IL_8B0X_123 | 1/a/1653:1658, 1/a/2008:2010 | No text annotation IL_12566.5 | ||
| IL_8B0X_124 | 1/a/1665:1667, 1/a/1999:2001 | Isolated tWW turn IL_10432.1 | ||
| IL_8B0X_125 | 1/a/1668:1671, 1/a/1997:1998 | Major groove platform; stack outside cWW IL_74641.1 | ||
| IL_8B0X_180 | 1/a/1668:1676, 1/a/1994:1998 | No text annotation IL_80252.1 | ||
| IL_8B0X_126 | 1/a/1671:1676, 1/a/1994:1997 | Intercalated tWH IL_28217.1 | ||
| IL_8B0X_127 | 1/a/1688:1693, 1/a/1698:1704 | tSH-tSH-tHH-tHS IL_20700.1 | ||
| IL_8B0X_128 | 1/a/1714:1720, 1/a/1744:1748 | 6x5 Sarcin-Ricin; G-bulge IL_82100.1 | ||
| IL_8B0X_129 | 1/a/1722:1726, 1/a/1738:1742 | Triple sheared IL_70744.1 | ||
| IL_8B0X_130 | 1/a/1729:1730, 1/a/1733:1735 | Single bulged C IL_05642.1 | ||
| IL_8B0X_131 | 1/a/1772:1773, 1/a/1984:1986 | Single bulged A IL_14190.1 | ||
| IL_8B0X_132 | 1/a/1800:1806, 1/a/1815:1823 | Kink-turn related IL_17069.6 | ||
| IL_8B0X_133 | 1/a/1839:1842, 1/a/1906:1907 | Minor groove platform, major groove intercalation IL_73108.1 | ||
| IL_8B0X_134 | 1/a/1843:1844, 1/a/1902:1905 | Major groove intercalation IL_71421.1 | ||
| IL_8B0X_135 | 1/a/1848:1851, 1/a/1897:1898 | Major groove minor groove platform; mini C-loop IL_73108.1 | ||
| IL_8B0X_181 | 1/a/1853:1862, 1/a/1886:1895 | No text annotation | homologous IL_5J7L_387 NA | |
| IL_8B0X_136 | 1/a/1866:1869, 1/a/1878:1882 | UAA/GAN related IL_77691.6 | ||
| IL_8B0X_137 | 1/a/1937:1938, 1/a/1968:1971 | Bulged stacked bases IL_24886.1 | ||
| IL_8B0X_138 | 1/a/1938:1949, 1/a/1965:1968 | No text annotation IL_84014.1 | ||
| IL_8B0X_139 | 1/a/2054:2056, 1/a/2621:2622 | Major groove platform IL_48076.7 | ||
| IL_8B0X_140 | 1/a/2058:2060, 1/a/2616:2619 | No text annotation IL_80025.1 | ||
| IL_8B0X_182 | 1/a/2071:2073, 1/a/2446:2447 | Single bulged U IL_97561.1 | ||
| IL_8B0X_143 | 1/a/2074:2075, 1/a/2442:2445 | Minor groove platform IL_34520.1 | ||
| IL_8B0X_144 | 1/a/2085:2087, 1/a/2240:2243 | Isolated tHS basepair with bulges IL_87316.1 | ||
| IL_8B0X_145 | 1/a/2089:2091, 1/a/2236:2238 | Isolated non-canonical cWW pair IL_71625.1 | ||
| IL_8B0X_146 | 1/a/2206:2208, 1/a/2224:2225 | Single bulged U IL_97561.1 | ||
| IL_8B0X_147 | 1/a/2301:2303, 1/a/2321:2325 | No text annotation IL_14250.1 | ||
| IL_8B0X_148 | 1/a/2354:2357, 1/a/2368:2371 | Double sheared IL_58355.1 | ||
| IL_8B0X_149 | 1/a/2405:2407, 1/a/2418:2419 | Single bulged U IL_97561.1 | ||
| IL_8B0X_183 | 1/a/2457:2458, 1/a/2502:2504 | Single stack bend IL_15011.1 | ||
| IL_8B0X_184 | 1/a/2458:2459, 1/a/2500:2502 | Major groove platform IL_48076.7 | ||
| IL_8B0X_185 | 1/a/2461:2463, 1/a/2497:2498 | Major groove platform IL_46637.1 | ||
| IL_8B0X_152 | 1/a/2463:2465, 1/a/2493:2497 | Major groove minor groove platform with extra cWW IL_36931.1 | ||
| IL_8B0X_153 | 1/a/2470:2474, 1/a/2484:2488 | Double sheared with non-canonical cWW IL_87767.1 | ||
| IL_8B0X_186 | 1/a/2511:2512, 1/a/2584:2586 | Major groove platform IL_46637.1 | ||
| IL_8B0X_155 | 1/a/2514:2516, 1/a/2578:2582 | Isolated non-canonical cWW with bulges IL_68118.1 | ||
| IL_8B0X_156 | 1/a/2516:2517, 1/a/2575:2578 | No text annotation IL_44609.1 | ||
| IL_8B0X_157 | 1/a/2526:2527, 1/a/2544:2547 | Major groove platform with intercalation IL_94991.1 | ||
| IL_8B0X_159 | 1/a/2595:2596, 1/a/2605:2607 | Single bulged A IL_14190.1 | ||
| IL_8B0X_160 | 1/a/2640:2644, 1/a/2778:2786 | tSH-tHS-tHW IL_04638.4 | ||
| IL_8B0X_161 | 1/a/2656:2662, 1/a/2667:2672 | Sarcin-Ricin target in LSU H95; G-bulge IL_16458.5 | ||
| IL_8B0X_162 | 1/a/2684:2688, 1/a/2729:2731 | C-loop IL_63596.12 | ||
| IL_8B0X_163 | 1/a/2691:2695, 1/a/2722:2726 | UAA/GAN related, with intercalation IL_82016.1 | ||
| IL_8B0X_164 | 1/a/2699:2700, 1/a/2715:2718 | Multiple bulged bases IL_44609.1 | ||
| IL_8B0X_165 | 1/a/2741:2746, 1/a/2766:2771 | UAA/GAN with extra cWW IL_91079.1 | ||
| IL_8B0X_166 | 1/a/2799:2800, 1/a/2803:2805 | Single bulged A IL_14190.1 | ||
| IL_8B0X_167 | 1/a/2810:2815, 1/a/2893:2896 | No text annotation | homologous IL_5J7L_351 NA | |
| IL_8B0X_168 | 1/a/2842:2843, 1/a/2882:2884 | Major groove intercalation IL_78536.1 | ||
| IL_8B0X_169 | 1/a/2847:2850, 1/a/2874:2878 | Multiple bulged bases with non-canonical cWW IL_60988.1 | ||
| IL_8B0X_170 | 1/a/2851:2856, 1/a/2869:2873 | tHS double platform IL_48489.1 | ||
| IL_8B0X_171 | 1/b/17:18, 1/b/65:67 | Major groove intercalation IL_14190.1 | ||
| IL_8B0X_172 | 1/b/23:28, 1/b/56:60 | No text annotation IL_18472.5 | ||
| IL_8B0X_173 | 1/b/30:31, 1/b/51:54 | Major groove minor groove platform; mini C-loop IL_73108.1 | ||
| IL_8B0X_174 | 1/b/34:38, 1/b/44:48 | Symmetric double minor groove platform IL_58103.12 | ||
| IL_8B0X_175 | 1/b/71:79, 1/b/97:105 | Bacterial 5S Loop E IL_71138.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8B0X_033 | No text annotation | ||
| IL_8B0X_045 | No text annotation | ||
| IL_8B0X_059 | Partly complementary | ||
| IL_8B0X_141 | No text annotation | ||
| IL_8B0X_142 | No text annotation | ||
| IL_8B0X_150 | No text annotation | ||
| IL_8B0X_151 | No text annotation | ||
| IL_8B0X_154 | No text annotation | ||
| IL_8B0X_158 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8B0X_001 | 1/A/46:47, 1/A/361:367, 1/A/393:395 | No text annotation J3_58657.1 | ||
| J3_8B0X_027 | 1/A/46:52, 1/A/359:367, 1/A/393:395 | No text annotation J3_63856.1 | ||
| J3_8B0X_002 | 1/A/586:588, 1/A/651:654, 1/A/754:755 | No text annotation J3_01633.1 | ||
| J3_8B0X_028 | 1/A/586:588, 1/A/651:655, 1/A/751:755 | No text annotation J3_17385.5 | ||
| J3_8B0X_003 | 1/A/672:673, 1/A/717:725, 1/A/732:734 | No text annotation J3_74074.1 | ||
| J3_8B0X_004 | 1/A/826:829, 1/A/857:861, 1/A/868:874 | No text annotation J3_02285.1 | ||
| J3_8B0X_005 | 1/A/936:939, 1/A/1344:1350, 1/A/1372:1379 | No text annotation J3_85722.1 | ||
| J3_8B0X_006 | 1/A/943:946, 1/A/1235:1237, 1/A/1337:1340 | No text annotation J3_44359.1 | ||
| J3_8B0X_007 | 1/A/955:962, 1/A/973:984, 1/A/1221:1225 | No text annotation J3_88451.1 | ||
| J3_8B0X_008 | 1/A/990:993, 1/A/1045:1047, 1/A/1210:1215 | No text annotation J3_84394.1 | ||
| J3_8B0X_029 | 1/A/990:997, 1/A/1044:1047, 1/A/1210:1215 | No text annotation J3_28881.1 | ||
| J3_8B0X_009 | 1/A/1003:1006, 1/A/1023:1027, 1/A/1034:1037 | No text annotation | ||
| J3_8B0X_010 | 1/A/1063:1068, 1/A/1107:1113, 1/A/1187:1193 | No text annotation J3_01343.1 | ||
| J3_8B0X_030 | 1/A/1073:1074, 1/A/1083:1086, 1/A/1099:1102 | No text annotation J3_11018.1 | ||
| J3_8B0X_012 | 1/A/1116:1118, 1/A/1155:1158, 1/A/1181:1184 | No text annotation J3_82365.5 | ||
| J3_8B0X_031 | 1/A/1116:1118, 1/A/1155:1161, 1/A/1175:1184 | No text annotation J3_40706.1 | ||
| J3_8B0X_013 | 1/A/1237:1241, 1/A/1296:1303, 1/A/1334:1337 | No text annotation J3_03192.1 | ||
| J3_8B0X_014 | 1/a/30:31, 1/a/474:481, 1/a/509:510 | No text annotation J3_68715.1 | ||
| J3_8B0X_032 | 1/a/30:31, 1/a/474:484, 1/a/496:510 | No text annotation J3_17917.1 | ||
| J3_8B0X_033 | 1/a/32:35, 1/a/445:461, 1/a/468:473 | No text annotation J3_07616.1 | ||
| J3_8B0X_015 | 1/a/56:57, 1/a/70:76, 1/a/110:114 | No text annotation J3_01004.1 | ||
| J3_8B0X_034 | 1/a/297:301, 1/a/316:325, 1/a/337:341 | No text annotation J3_77124.1 | ||
| J3_8B0X_016 | 1/a/685:691, 1/a/775:777, 1/a/793:796 | No text annotation J3_46658.1 | ||
| J3_8B0X_017 | 1/a/700:702, 1/a/734:738, 1/a/762:765 | No text annotation J3_69816.1 | ||
| J3_8B0X_018 | 1/a/1300:1305, 1/a/1627:1629, 1/a/1641:1644 | No text annotation J3_32852.7 | ||
| J3_8B0X_019 | 1/a/1308:1311, 1/a/1607:1613, 1/a/1622:1624 | No text annotation J3_47341.1 | ||
| J3_8B0X_020 | 1/a/1346:1351, 1/a/1384:1387, 1/a/1404:1405 | No text annotation | homologous J3_5J7L_043 NA | |
| J3_8B0X_035 | 1/a/1426:1431, 1/a/1566:1567, 1/a/1570:1576 | No text annotation J3_34864.3 | ||
| J3_8B0X_021 | 1/a/2095:2097, 1/a/2200:2204, 1/a/2227:2232 | Kink-turn 3-way junction J3_17460.1 | ||
| J3_8B0X_036 | 1/a/2286:2288, 1/a/2388:2399, 1/a/2425:2431 | No text annotation J3_04772.1 | ||
| J3_8B0X_022 | 1/a/2299:2301, 1/a/2325:2327, 1/a/2336:2341 | No text annotation J3_05327.1 | ||
| J3_8B0X_037 | 1/a/2299:2303, 1/a/2321:2327, 1/a/2336:2341 | No text annotation | homologous J3_5J7L_071 NA | |
| J3_8B0X_023 | 1/a/2521:2524, 1/a/2549:2551, 1/a/2565:2571 | No text annotation J3_32601.6 | ||
| J3_8B0X_024 | 1/a/2793:2795, 1/a/2809:2810, 1/a/2896:2898 | No text annotation | homologous J3_5J7L_047 NA | |
| J3_8B0X_025 | 1/a/2816:2819, 1/a/2835:2840, 1/a/2886:2892 | No text annotation | homologous J3_5J7L_048 NA | |
| J3_8B0X_026 | 1/b/10:16, 1/b/68:70, 1/b/106:110 | No text annotation | homologous J3_5J7L_049 NA | |
| J4_8B0X_001 | 1/A/115:122, 1/A/239:240, 1/A/286:289, 1/A/311:312 | No text annotation J4_90044.1 | ||
| J4_8B0X_002 | 1/A/142:144, 1/A/178:184, 1/A/193:198, 1/A/219:221 | No text annotation | homologous J4_5J7L_002 NA | |
| J4_8B0X_003 | 1/A/575:577, 1/A/764:769, 1/A/810:821, 1/A/879:880 | No text annotation J4_14595.1 | ||
| J4_8B0X_004 | 1/a/268:269, 1/a/370:375, 1/a/399:406, 1/a/421:424 | No text annotation J4_94698.1 | ||
| J4_8B0X_005 | 1/a/297:301, 1/a/316:319, 1/a/323:325, 1/a/337:341 | No text annotation J4_16174.1 | ||
| J4_8B0X_006 | 1/a/603:606, 1/a/626:630, 1/a/637:640, 1/a/652:658 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_8B0X_007 | 1/a/1272:1278, 1/a/1296:1297, 1/a/1647:1650, 1/a/2013:2014 | No text annotation J4_64571.6 | ||
| J4_8B0X_008 | 1/a/1312:1316, 1/a/1340:1345, 1/a/1406:1407, 1/a/1599:1606 | No text annotation J4_77353.1 | ||
| J4_8B0X_009 | 1/a/1315:1316, 1/a/1340:1345, 1/a/1406:1407, 1/a/1599:1605 | No text annotation J4_48150.1 | ||
| J4_8B0X_010 | 1/a/1446:1447, 1/a/1468:1469, 1/a/1527:1528, 1/a/1548:1549 | No text annotation J4_75575.1 | ||
| J4_8B0X_011 | 1/a/1774:1778, 1/a/1790:1794, 1/a/1829:1832, 1/a/1979:1983 | No text annotation J4_61477.6 | ||
| J4_8B0X_012 | 1/a/1835:1837, 1/a/1909:1910, 1/a/1928:1937, 1/a/1971:1976 | No text annotation J4_42306.1 | ||
| J4_8B0X_013 | 1/a/2289:2293, 1/a/2347:2351, 1/a/2374:2376, 1/a/2385:2387 | No text annotation J4_98139.1 | ||
| J4_8B0X_014 | 1/a/2647:2650, 1/a/2678:2680, 1/a/2735:2739, 1/a/2773:2775 | No text annotation J4_77044.5 | ||
| J5_8B0X_001 | 1/A/36:39, 1/A/403:406, 1/A/436:440, 1/A/497:500, 1/A/545:548 | No text annotation | homologous J5_5J7L_001 NA | |
| J5_8B0X_002 | 1/A/36:39, 1/A/403:406, 1/A/436:442, 1/A/492:500, 1/A/545:548 | No text annotation | homologous J5_5J7L_002 NA | |
| J5_8B0X_003 | 1/A/58:61, 1/A/106:113, 1/A/314:316, 1/A/337:339, 1/A/350:354 | No text annotation J5_58574.1 | ||
| J5_8B0X_004 | 1/a/47:54, 1/a/116:121, 1/a/130:131, 1/a/148:150, 1/a/176:178 | No text annotation J5_27223.1 | ||
| J5_8B0X_005 | 1/a/531:533, 1/a/562:566, 1/a/579:581, 1/a/1263:1264, 1/a/2021:2022 | No text annotation J5_43153.6 | ||
| J5_8B0X_006 | 1/a/586:591, 1/a/670:673, 1/a/811:814, 1/a/1197:1198, 1/a/1252:1258 | No text annotation J5_74302.6 | ||
| J5_8B0X_007 | 1/a/1676:1684, 1/a/1708:1709, 1/a/1753:1754, 1/a/1758:1766, 1/a/1992:1994 | No text annotation J5_99177.1 | ||
| J5_8B0X_008 | 1/a/2061:2068, 1/a/2450:2457, 1/a/2504:2510, 1/a/2587:2592, 1/a/2610:2615 | No text annotation J5_27349.1 | ||
| J5_8B0X_009 | 1/a/2078:2081, 1/a/2247:2250, 1/a/2262:2263, 1/a/2285:2286, 1/a/2431:2439 | No text annotation J5_39529.2 | ||
| J6_8B0X_001 | 1/a/45:46, 1/a/179:183, 1/a/214:224, 1/a/231:235, 1/a/262:266, 1/a/426:433 | No text annotation J6_56891.1 | ||
| J6_8B0X_002 | 1/a/2078:2081, 1/a/2247:2250, 1/a/2262:2263, 1/a/2285:2288, 1/a/2388:2399, 1/a/2425:2439 | No text annotation J6_64525.2 | ||
| J7_8B0X_001 | 1/a/8:15, 1/a/525:531, 1/a/2022:2027, 1/a/2044:2047, 1/a/2629:2634, 1/a/2792:2793, 1/a/2898:2899 | No text annotation | ||
| J7_8B0X_002 | 1/a/819:824, 1/a/837:839, 1/a/944:948, 1/a/973:978, 1/a/989:993, 1/a/1165:1166, 1/a/1187:1192 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8B0X_011 | No text annotation |
Coloring options: