RNA 3D Hub //

8B0X Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8B0X_0011/A/12:22No text annotation
HL_73535.1
HL_8B0X_0021/A/158:163GNRA
HL_34789.2
HL_8B0X_0031/A/186:191GNRA
HL_34789.2
HL_8B0X_0051/A/259:267GNRA related
HL_87268.1
HL_8B0X_0061/A/296:301GNRA
HL_34789.2
HL_8B0X_0071/A/320:333No text annotation
HL_39665.1
HL_8B0X_0081/A/342:347UNCG
HL_61337.2
HL_8B0X_0091/A/379:384GNRA
HL_34789.2
HL_8B0X_0101/A/419:424UNCG
HL_61337.2
HL_8B0X_0111/A/462:470GNRA wlth extra near cWW
HL_98423.2
HL_8B0X_0991/A/522:527GNRA variation
HL_34789.2
HL_8B0X_0131/A/617:623GNRA-like with tWH
HL_86621.1
HL_8B0X_0141/A/689:698No text annotation
HL_38491.2
HL_8B0X_0151/A/726:731GNRA
HL_34789.2
HL_8B0X_0161/A/786:796No text annotation
HL_38491.2
HL_8B0X_0171/A/862:867GNRA
HL_34789.2
HL_8B0X_0181/A/897:902GNRA
HL_34789.2
HL_8B0X_0191/A/963:972No text annotation
HL_97521.1
HL_8B0X_0201/A/1012:1017GNRA
HL_34789.2
HL_8B0X_0211/A/1076:1081GNRA
HL_34789.2
HL_8B0X_0221/A/1089:1096T-loop related
HL_63894.2
HL_8B0X_0231/A/1134:1140No text annotation
HL_13184.2
HL_8B0X_0241/A/1165:1171GNRA
HL_34789.2
HL_8B0X_0251/A/1265:1270GNRA
HL_34789.2
HL_8B0X_0261/A/1314:1323T-loop with 3 stacked bulged bases
HL_93658.1
HL_8B0X_0271/A/1356:1366No text annotation
HL_86432.1
HL_8B0X_0281/A/1449:1454UNCG
HL_61337.2
HL_8B0X_0291/A/1515:1520GNRA
HL_34789.2
HL_8B0X_0301/Z/13:22tRNA D-loop
HL_63054.2
HL_8B0X_0311/Z/31:39tRNA anticodon loop
HL_81376.2
HL_8B0X_0321/Z/53:61T-loop with 2 stacked bulged bases
HL_33597.2
HL_8B0X_0331/a/59:68No text annotation
HL_35677.5
HL_8B0X_0341/a/87:95No text annotation
HL_65821.1
HL_8B0X_0351/a/123:128No text annotation
HL_82710.3
HL_8B0X_0361/a/137:142UNCG
HL_61337.2
HL_8B0X_0371/a/158:168No text annotation
HL_50765.2
HL_8B0X_0381/a/194:201No text annotation
HL_48677.1
HL_8B0X_0391/a/225:230No text annotation
HL_63151.1
HL_8B0X_0401/a/246:252No text annotation
HL_76371.2
HL_8B0X_0411/a/305:312T-loop with 2 stacked bulged bases
HL_13999.2
HL_8B0X_0421/a/319:323No text annotation
HL_75660.7
HL_8B0X_0431/a/327:335T-loop with unstacked turn
HL_27670.3
HL_8B0X_0441/a/382:392No text annotation
HL_91503.8
HL_8B0X_0451/a/410:417Pseudoknot geometry
HL_30680.5
HL_8B0X_0461/a/462:467GNRA
HL_34789.2
HL_8B0X_0471/a/487:493GNRA
HL_34789.2
HL_8B0X_0481/a/568:577T-loop with 2 stacked bulged bases
HL_33597.2
HL_8B0X_0491/a/613:619GNRA
HL_34789.2
HL_8B0X_0501/a/631:636GNRA
HL_34789.2
HL_8B0X_0511/a/643:649No text annotation
HL_07380.1
HL_8B0X_0521/a/714:721GNRA wlth tandem sheared
HL_98423.2
HL_8B0X_0531/a/746:755No text annotation
HL_50204.1
HL_8B0X_0541/a/781:787No text annotation
HL_92935.1
HL_8B0X_0551/a/828:833No text annotation
HL_27530.1
HL_8B0X_0561/a/887:893No text annotation
HL_67772.1
HL_8B0X_1001/a/957:964GNRA
HL_34789.2
HL_8B0X_0581/a/980:987No text annotation
HL_47171.1
HL_8B0X_0591/a/1224:1229GNRA
HL_34789.2
HL_8B0X_0601/a/1283:1291T-loop with 2 stacked bulged bases
HL_33597.2
HL_8B0X_0611/a/1326:1332Pseudoknot geometry with 3' bulge
HL_49081.1
HL_8B0X_0621/a/1365:1370GNRA
HL_34789.2
HL_8B0X_0631/a/1391:1400No text annotation
HL_77449.1
HL_8B0X_0641/a/1453:1461Mini UNCG with extended bulge
HL_00557.1
HL_8B0X_0651/a/1494:1500Pseudoknot geometry with 3' bulge
HL_49081.1
HL_8B0X_0661/a/1535:1540UNCG
HL_13184.2
HL_8B0X_0671/a/1567:1570Mini UNCG
HL_90436.2
HL_8B0X_0681/a/1614:1621No text annotation
HL_28592.1
HL_8B0X_0691/a/1632:1638GNRA
HL_34789.2
HL_8B0X_0701/a/1693:1698UNCG
HL_61337.2
HL_8B0X_0711/a/1730:1733Mini UNCG
HL_90436.2
HL_8B0X_0721/a/1754:1758No text annotation
HL_80709.5
HL_8B0X_0731/a/1779:1789No text annotation
HL_87681.1
HL_8B0X_0741/a/1808:1813GNRA related
HL_37569.2
HL_8B0X_0761/a/1914:1924No text annotation
HL_82185.1
HL_8B0X_0771/a/1953:1961No text annotation
HL_61418.2
HL_8B0X_0781/a/2031:2040No text annotation
HL_78372.1
HL_8B0X_0791/a/2213:2219No text annotation
HL_42293.1
HL_8B0X_0801/a/2252:2260No text annotation
HL_11974.2
HL_8B0X_0811/a/2268:2280No text annotation
HL_02042.1
HL_8B0X_1011/a/2308:2316No text annotation
HL_02452.1
HL_8B0X_0831/a/2328:2335Pseudoknot geometry
HL_52651.2
HL_8B0X_0841/a/2360:2365GNRA
HL_34789.2
HL_8B0X_0851/a/2378:2383GNRA
HL_34789.2
HL_8B0X_0861/a/2408:2417No text annotation
HL_51853.2
HL_8B0X_0871/a/2475:2483No text annotation
HL_52011.1
HL_8B0X_0881/a/2532:2539GNRA variation
HL_46665.2
HL_8B0X_0891/a/2555:2561No text annotation
HL_48677.1
HL_8B0X_0901/a/2598:2603GNRA
HL_34789.2
HL_8B0X_0911/a/2662:2667GNRA
HL_34789.2
HL_8B0X_0921/a/2705:2710Ribsomal LSU H95
HL_12125.2
HL_8B0X_0931/a/2749:2763No text annotation
HL_53269.2
HL_8B0X_0941/a/2800:2803Mini UNCG
HL_90436.2
HL_8B0X_0951/a/2823:2831No text annotation
HL_37889.1
HL_8B0X_0961/a/2860:2865GNRA
HL_34789.2
HL_8B0X_1021/b/34:48No text annotation
HL_97756.3
HL_8B0X_0971/b/38:44No text annotation
HL_59381.2
HL_8B0X_0981/b/86:90Mini UNCG
HL_90436.2

Problematic loops

#loop idProblemSequence
HL_8B0X_004No text annotation
HL_8B0X_012No text annotation
HL_8B0X_057No text annotation
HL_8B0X_075No text annotation
HL_8B0X_082No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8B0X_0011/A/30:32,
1/A/552:553		Single bulged G
IL_28408.2
IL_8B0X_0021/A/44:45,
1/A/396:398		Single bulged A
IL_14190.2
IL_8B0X_0031/A/47:52,
1/A/359:361		No text annotation
IL_32983.2
IL_8B0X_0041/A/54:56,
1/A/356:357		Minor groove platform
IL_34520.2
IL_8B0X_0051/A/63:66,
1/A/103:104		Multiple bulged bases
IL_71421.2
IL_8B0X_0061/A/67:69,
1/A/99:102		Minor groove platform with extra cWW
IL_82096.1
IL_8B0X_0071/A/70:73,
1/A/97:98		Minor groove platform
IL_87975.1
IL_8B0X_0081/A/75:76,
1/A/93:95		Single bulged G
IL_28408.2
IL_8B0X_0091/A/128:131,
1/A/231:233		Isolated non-canonical cWW pair
IL_76400.1
IL_8B0X_0101/A/132:136,
1/A/227:230		Minor groove platform related
IL_60988.2
IL_8B0X_0111/A/144:146,
1/A/176:178		Isolated cWH basepair
IL_10892.2
IL_8B0X_0121/A/147:153,
1/A/168:175		tWH-tWH-tHW-tHW
IL_24485.1
IL_8B0X_0131/A/242:247,
1/A/277:284		Kink-turn with non-sequential stacking
IL_46174.4
IL_8B0X_0141/A/249:252,
1/A/274:275		No text annotation
IL_22002.1
IL_8B0X_0151/A/292:293,
1/A/304:308		C-loop
IL_06671.1
IL_8B0X_0161/A/367:369,
1/A/392:393		Single bulged U
IL_97561.2
IL_8B0X_0171/A/371:375,
1/A/389:390		C-loop
IL_26900.1
IL_8B0X_0181/A/375:376,
1/A/387:389		Single bulged G
IL_28408.2
IL_8B0X_0191/A/409:416,
1/A/427:433		No text annotation
IL_62329.1
IL_8B0X_0201/A/440:442,
1/A/492:497		No text annotation
IL_02111.1
IL_8B0X_0211/A/446:450,
1/A/483:488		tSH-tHW-tWW
IL_82100.1
IL_8B0X_0221/A/450:455,
1/A/477:483		No text annotation
homologous
IL_5J7L_023
NA
IL_8B0X_0231/A/504:511,
1/A/540:541		SSU/LSU pseudoknot
IL_11411.1
IL_8B0X_0241/A/515:521,
1/A/528:536		Kink-turn related
IL_52042.1
IL_8B0X_0251/A/569:575,
1/A/880:881		No text annotation
IL_20847.1
IL_8B0X_0261/A/580:584,
1/A/757:761		tSH-tHW-tHS
IL_05821.1
IL_8B0X_0271/A/594:596,
1/A/644:645		Major groove platform
IL_48076.8
IL_8B0X_0281/A/597:598,
1/A/640:643		Major groove minor groove platform; mini C-loop
IL_73108.2
IL_8B0X_0291/A/605:612,
1/A/628:633		No text annotation
IL_04211.1
IL_8B0X_0301/A/654:655,
1/A/751:754		Major groove platform; stack outside cWW
IL_74641.2
IL_8B0X_0311/A/659:660,
1/A/745:747		Single stack bend
IL_15011.2
IL_8B0X_0321/A/662:666,
1/A/740:743		Tandem non-canonical cWW pairs
IL_15225.2
IL_8B0X_1761/A/673:677,
1/A/713:717		Triple non-canonical cWW pairs
IL_71154.2
IL_8B0X_0341/A/684:688,
1/A/699:706		Kink-turn
IL_71972.1
IL_8B0X_0351/A/774:778,
1/A/804:805		Left turn
IL_29346.3
IL_8B0X_0361/A/779:783,
1/A/799:803		tSH-tHW-tHS
IL_05821.1
IL_8B0X_0371/A/887:894,
1/A/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
IL_84044.1
IL_8B0X_0381/A/922:923,
1/A/1393:1395		Single bulged A
IL_14190.2
IL_8B0X_0391/A/925:927,
1/A/1390:1391		Single bulged G
IL_28408.2
IL_8B0X_0401/A/933:935,
1/A/1380:1384		Minor groove platform
IL_61370.1
IL_8B0X_0411/A/953:954,
1/A/1226:1228		No text annotation
IL_34520.2
IL_8B0X_0421/A/993:997,
1/A/1044:1045		Minor groove platform
IL_61370.1
IL_8B0X_0431/A/998:999,
1/A/1041:1043		Single stack bend
IL_15011.2
IL_8B0X_0441/A/1048:1050,
1/A/1208:1209		Single bulged U
IL_97561.2
IL_8B0X_0461/A/1052:1056,
1/A/1204:1206		Isolated cWS basepair
IL_82453.1
IL_8B0X_0471/A/1057:1058,
1/A/1199:1203		Minor groove platform
IL_24264.1
IL_8B0X_0481/A/1060:1061,
1/A/1195:1197		Single bulged A
IL_14190.2
IL_8B0X_0491/A/1061:1063,
1/A/1193:1195		Isolated non-canonical cWW pair
IL_68118.2
IL_8B0X_0501/A/1124:1128,
1/A/1144:1149		No text annotation
IL_38603.1
IL_8B0X_0511/A/1129:1132,
1/A/1142:1143		Minor groove platform
IL_87975.1
IL_8B0X_0521/A/1158:1161,
1/A/1175:1181		No text annotation
IL_32376.1
IL_8B0X_0531/A/1247:1253,
1/A/1284:1290		No text annotation
IL_12056.1
IL_8B0X_0541/A/1255:1258,
1/A/1277:1282		180 degree turn
IL_08849.1
IL_8B0X_0551/A/1259:1263,
1/A/1272:1276		Double sheared with non-canonical cWW
IL_87767.2
IL_8B0X_0561/A/1303:1308,
1/A/1329:1334		No text annotation
IL_57885.2
IL_8B0X_0571/A/1399:1401,
1/A/1501:1504		No text annotation
IL_18228.1
IL_8B0X_0581/A/1401:1404,
1/A/1497:1501		No text annotation
IL_25873.2
IL_8B0X_1771/A/1405:1407,
1/A/1494:1496		Isolated non-canonical cWW pair
IL_01003.2
IL_8B0X_1781/A/1407:1409,
1/A/1491:1494		No text annotation
IL_75527.2
IL_8B0X_0601/A/1412:1414,
1/A/1486:1488		Isolated non-canonical cWW pair
IL_01003.2
IL_8B0X_0611/A/1416:1419,
1/A/1481:1484		Double sheared
IL_58355.2
IL_8B0X_0621/A/1430:1435,
1/A/1466:1470		Triple sheared related
IL_67427.1
IL_8B0X_0631/A/1440:1442,
1/A/1460:1461		Single bulged A
IL_34520.2
IL_8B0X_0641/A/1445:1448,
1/A/1455:1457		No text annotation
IL_05502.1
IL_8B0X_0651/a/24:30,
1/a/510:516		Triple sheared with non-canonical cWW
IL_22311.1
IL_8B0X_0661/a/36:37,
1/a/442:444		Single bulged A
IL_14190.2
IL_8B0X_0671/a/43:44,
1/a/434:436		Minor groove platform
IL_34520.2
IL_8B0X_0681/a/81:85,
1/a/97:105		No text annotation
IL_28245.1
IL_8B0X_0691/a/183:184,
1/a/212:214		Single stack bend
IL_15011.2
IL_8B0X_0701/a/188:194,
1/a/201:208		8x7 Sarcin-Ricin; G-bulge
IL_62167.2
IL_8B0X_0711/a/239:245,
1/a/253:258		7x6 Sarcin-Ricin; G-bulge
IL_02666.1
IL_8B0X_0721/a/269:271,
1/a/366:370		No text annotation
homologous
IL_5J7L_252
NA
IL_8B0X_0731/a/274:281,
1/a/359:363		No text annotation
IL_22028.1
IL_8B0X_0741/a/293:295,
1/a/343:347		No text annotation
IL_76658.1
IL_8B0X_0751/a/481:484,
1/a/496:509		No text annotation
IL_44923.1
IL_8B0X_0761/a/536:539,
1/a/556:559		Double sheared
IL_58355.2
IL_8B0X_0771/a/566:568,
1/a/577:579		Isolated non-canonical cWW pair
IL_71625.2
IL_8B0X_0781/a/608:612,
1/a/620:624		AAA cross-strand stack
IL_66798.3
IL_8B0X_0791/a/674:676,
1/a/808:810		No text annotation
IL_01003.2
IL_8B0X_0801/a/676:680,
1/a/801:808		tHW-tHW cross-strand stack
IL_73855.1
IL_8B0X_0811/a/699:700,
1/a/765:767		Single bulged A
IL_14190.2
IL_8B0X_0821/a/704:705,
1/a/730:732		Single bulged G
IL_28408.2
IL_8B0X_0831/a/705:709,
1/a/726:730		Triple sheared
IL_15190.2
IL_8B0X_0841/a/740:742,
1/a/759:760		Major groove platform
IL_48076.8
IL_8B0X_0851/a/777:779,
1/a/789:793		Multiple bulged bases
IL_89509.1
IL_8B0X_0861/a/839:840,
1/a/942:944		Single stack bend
IL_15011.2
IL_8B0X_0871/a/846:849,
1/a/935:936		90 degree turn
IL_79144.1
IL_8B0X_1791/a/846:850,
1/a/932:936		No text annotation
IL_01742.1
IL_8B0X_0881/a/849:850,
1/a/932:935		Stack outside cWW
IL_36175.2
IL_8B0X_0891/a/852:853,
1/a/928:930		Single stack bend
IL_15011.2
IL_8B0X_0901/a/858:864,
1/a/917:923		7x7 Sarcin-Ricin with intercalated A; G-bulge
IL_94128.1
IL_8B0X_0911/a/864:865,
1/a/915:917		Single bulged G
IL_28408.2
IL_8B0X_0921/a/866:870,
1/a/911:914		C-loop with bulged stacked A's
IL_16301.1
IL_8B0X_0931/a/872:874,
1/a/907:909		Isolated non-canonical cWW pair
IL_01003.2
IL_8B0X_0941/a/877:881,
1/a/900:904		Double sheared with non-canonical cWW
IL_87767.2
IL_8B0X_0951/a/882:883,
1/a/897:899		No text annotation
IL_14190.2
IL_8B0X_0961/a/996:998,
1/a/1161:1162		Single bulged C
IL_05642.2
IL_8B0X_0971/a/1000:1004,
1/a/1155:1159		UAA/GAN
IL_08938.1
IL_8B0X_0981/a/1006:1013,
1/a/1152:1153		SSU/LSU pseudoknot
IL_11411.1
IL_8B0X_0991/a/1013:1015,
1/a/1151:1152		Single bulged U
IL_97561.2
IL_8B0X_1001/a/1020:1026,
1/a/1142:1146		Kink-turn related
IL_57188.6
IL_8B0X_1011/a/1026:1032,
1/a/1126:1142		No text annotation
IL_50715.4
IL_8B0X_1021/a/1033:1036,
1/a/1123:1125		Isolated non-canonical cWW pair
IL_76400.1
IL_8B0X_1031/a/1040:1043,
1/a/1116:1119		Tandem non-canonical cWW pairs
IL_15225.2
IL_8B0X_1041/a/1045:1053,
1/a/1110:1114		Kink-turn
IL_99692.3
IL_8B0X_1051/a/1198:1200,
1/a/1249:1252		Isolated cWS basepair
IL_42997.5
IL_8B0X_1061/a/1204:1208,
1/a/1242:1245		No text annotation
homologous
IL_5J7L_287
NA
IL_8B0X_1071/a/1210:1217,
1/a/1236:1240		Kink-turn
IL_90775.2
IL_8B0X_1081/a/1264:1271,
1/a/2015:2021		8x7 Sarcin-Ricin; G-bulge
IL_62167.2
IL_8B0X_1091/a/1312:1315,
1/a/1605:1606		Major groove platform; stack outside cWW
IL_74641.2
IL_8B0X_1101/a/1321:1325,
1/a/1333:1335		C-loop
IL_63596.12
IL_8B0X_1111/a/1353:1357,
1/a/1378:1382		UAA/GAN
IL_89021.3
IL_8B0X_1121/a/1359:1363,
1/a/1372:1376		tSH-tHW-tHS
IL_05821.1
IL_8B0X_1131/a/1417:1418,
1/a/1584:1589		No text annotation
homologous
IL_5J7L_294
NA
IL_8B0X_1141/a/1419:1423,
1/a/1579:1583		UAA/GAN
IL_08938.1
IL_8B0X_1151/a/1434:1437,
1/a/1559:1563		Tandem non-canonical cWW pairs
IL_28284.1
IL_8B0X_1161/a/1439:1442,
1/a/1553:1557		tSH-tHW
IL_74317.1
IL_8B0X_1171/a/1452:1453,
1/a/1461:1463		Single bulged U
IL_97561.2
IL_8B0X_1181/a/1470:1473,
1/a/1522:1526		No text annotation
IL_68574.5
IL_8B0X_1191/a/1476:1480,
1/a/1515:1519		tSH-tHW-tHS
IL_38862.5
IL_8B0X_1201/a/1483:1484,
1/a/1509:1512		180 degree turn
IL_52564.1
IL_8B0X_1211/a/1491:1493,
1/a/1501:1502		Single bulged A
IL_14190.2
IL_8B0X_1221/a/1528:1531,
1/a/1544:1548		UAA/GAN variation
IL_45790.1
IL_8B0X_1231/a/1653:1658,
1/a/2008:2010		No text annotation
IL_12566.5
IL_8B0X_1241/a/1665:1667,
1/a/1999:2001		Isolated tWW turn
IL_10432.1
IL_8B0X_1251/a/1668:1671,
1/a/1997:1998		Major groove platform; stack outside cWW
IL_74641.2
IL_8B0X_1801/a/1668:1676,
1/a/1994:1998		No text annotation
IL_80252.1
IL_8B0X_1261/a/1671:1676,
1/a/1994:1997		Intercalated tWH
IL_28217.1
IL_8B0X_1271/a/1688:1693,
1/a/1698:1704		tSH-tSH-tHH-tHS
IL_20700.1
IL_8B0X_1281/a/1714:1720,
1/a/1744:1748		6x5 Sarcin-Ricin; G-bulge
IL_82100.1
IL_8B0X_1291/a/1722:1726,
1/a/1738:1742		Triple sheared
IL_70744.1
IL_8B0X_1301/a/1729:1730,
1/a/1733:1735		Single bulged C
IL_05642.2
IL_8B0X_1311/a/1772:1773,
1/a/1984:1986		Single bulged A
IL_14190.2
IL_8B0X_1321/a/1800:1806,
1/a/1815:1823		Kink-turn related
IL_17069.6
IL_8B0X_1331/a/1839:1842,
1/a/1906:1907		Minor groove platform, major groove intercalation
IL_55206.1
IL_8B0X_1341/a/1843:1844,
1/a/1902:1905		Major groove intercalation
IL_71421.2
IL_8B0X_1351/a/1848:1851,
1/a/1897:1898		Major groove minor groove platform; mini C-loop
IL_73108.2
IL_8B0X_1811/a/1853:1862,
1/a/1886:1895		No text annotation
homologous
IL_5J7L_387
NA
IL_8B0X_1361/a/1866:1869,
1/a/1878:1882		UAA/GAN related
IL_77691.7
IL_8B0X_1371/a/1937:1938,
1/a/1968:1971		Bulged stacked bases
IL_24886.2
IL_8B0X_1381/a/1938:1949,
1/a/1965:1968		No text annotation
IL_84014.1
IL_8B0X_1391/a/2054:2056,
1/a/2621:2622		Major groove platform
IL_48076.8
IL_8B0X_1401/a/2058:2060,
1/a/2616:2619		No text annotation
IL_80025.1
IL_8B0X_1821/a/2071:2073,
1/a/2446:2447		Single bulged U
IL_97561.2
IL_8B0X_1431/a/2074:2075,
1/a/2442:2445		Minor groove platform
IL_34520.2
IL_8B0X_1441/a/2085:2087,
1/a/2240:2243		Isolated tHS basepair with bulges
IL_87316.1
IL_8B0X_1451/a/2089:2091,
1/a/2236:2238		Isolated non-canonical cWW pair
IL_71625.2
IL_8B0X_1461/a/2206:2208,
1/a/2224:2225		Single bulged U
IL_97561.2
IL_8B0X_1471/a/2301:2303,
1/a/2321:2325		No text annotation
IL_14250.1
IL_8B0X_1481/a/2354:2357,
1/a/2368:2371		Double sheared
IL_58355.2
IL_8B0X_1491/a/2405:2407,
1/a/2418:2419		Single bulged U
IL_97561.2
IL_8B0X_1831/a/2457:2458,
1/a/2502:2504		Single stack bend
IL_15011.2
IL_8B0X_1841/a/2458:2459,
1/a/2500:2502		Major groove platform
IL_48076.8
IL_8B0X_1851/a/2461:2463,
1/a/2497:2498		Major groove platform
IL_46637.2
IL_8B0X_1521/a/2463:2465,
1/a/2493:2497		Major groove minor groove platform with extra cWW
IL_36931.2
IL_8B0X_1531/a/2470:2474,
1/a/2484:2488		Double sheared with non-canonical cWW
IL_87767.2
IL_8B0X_1861/a/2511:2512,
1/a/2584:2586		Major groove platform
IL_46637.2
IL_8B0X_1551/a/2514:2516,
1/a/2578:2582		Isolated non-canonical cWW with bulges
IL_68118.2
IL_8B0X_1561/a/2516:2517,
1/a/2575:2578		No text annotation
IL_44609.2
IL_8B0X_1571/a/2526:2527,
1/a/2544:2547		Major groove platform with intercalation
IL_94991.2
IL_8B0X_1591/a/2595:2596,
1/a/2605:2607		Single bulged A
IL_14190.2
IL_8B0X_1601/a/2640:2644,
1/a/2778:2786		tSH-tHS-tHW
IL_04638.4
IL_8B0X_1611/a/2656:2662,
1/a/2667:2672		Sarcin-Ricin target in LSU H95; G-bulge
IL_16458.5
IL_8B0X_1621/a/2684:2688,
1/a/2729:2731		C-loop
IL_63596.12
IL_8B0X_1631/a/2691:2695,
1/a/2722:2726		UAA/GAN related, with intercalation
IL_82016.1
IL_8B0X_1641/a/2699:2700,
1/a/2715:2718		Multiple bulged bases
IL_44609.2
IL_8B0X_1651/a/2741:2746,
1/a/2766:2771		UAA/GAN with extra cWW
IL_91079.1
IL_8B0X_1661/a/2799:2800,
1/a/2803:2805		Single bulged A
IL_14190.2
IL_8B0X_1671/a/2810:2815,
1/a/2893:2896		No text annotation
homologous
IL_5J7L_351
NA
IL_8B0X_1681/a/2842:2843,
1/a/2882:2884		Major groove intercalation
IL_77710.1
IL_8B0X_1691/a/2847:2850,
1/a/2874:2878		Multiple bulged bases with non-canonical cWW
IL_60988.2
IL_8B0X_1701/a/2851:2856,
1/a/2869:2873		tHS double platform
IL_48489.1
IL_8B0X_1711/b/17:18,
1/b/65:67		Major groove intercalation
IL_14190.2
IL_8B0X_1721/b/23:28,
1/b/56:60		No text annotation
IL_18472.5
IL_8B0X_1731/b/30:31,
1/b/51:54		Major groove minor groove platform; mini C-loop
IL_73108.2
IL_8B0X_1741/b/34:38,
1/b/44:48		Symmetric double minor groove platform
IL_58103.12
IL_8B0X_1751/b/71:79,
1/b/97:105		Bacterial 5S Loop E
IL_71138.1

Problematic loops

#loop idProblemSequence
IL_8B0X_033No text annotation
IL_8B0X_045No text annotation
IL_8B0X_059Partly complementary
IL_8B0X_141No text annotation
IL_8B0X_142No text annotation
IL_8B0X_150No text annotation
IL_8B0X_151No text annotation
IL_8B0X_154No text annotation
IL_8B0X_158No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8B0X_0011/A/46:47,
1/A/361:367,
1/A/393:395		No text annotation
J3_58657.1
J3_8B0X_0271/A/46:52,
1/A/359:367,
1/A/393:395		No text annotation
J3_63856.1
J3_8B0X_0021/A/586:588,
1/A/651:654,
1/A/754:755		No text annotation
J3_01633.1
J3_8B0X_0281/A/586:588,
1/A/651:655,
1/A/751:755		No text annotation
J3_17385.5
J3_8B0X_0031/A/672:673,
1/A/717:725,
1/A/732:734		No text annotation
J3_74074.1
J3_8B0X_0041/A/826:829,
1/A/857:861,
1/A/868:874		No text annotation
J3_02285.1
J3_8B0X_0051/A/936:939,
1/A/1344:1350,
1/A/1372:1379		No text annotation
J3_85722.1
J3_8B0X_0061/A/943:946,
1/A/1235:1237,
1/A/1337:1340		No text annotation
J3_44359.1
J3_8B0X_0071/A/955:962,
1/A/973:984,
1/A/1221:1225		No text annotation
J3_88451.1
J3_8B0X_0081/A/990:993,
1/A/1045:1047,
1/A/1210:1215		No text annotation
J3_84394.1
J3_8B0X_0291/A/990:997,
1/A/1044:1047,
1/A/1210:1215		No text annotation
J3_28881.1
J3_8B0X_0091/A/1003:1006,
1/A/1023:1027,
1/A/1034:1037		No text annotation
J3_8B0X_0101/A/1063:1068,
1/A/1107:1113,
1/A/1187:1193		No text annotation
J3_01343.1
J3_8B0X_0301/A/1073:1074,
1/A/1083:1086,
1/A/1099:1102		No text annotation
J3_11018.1
J3_8B0X_0121/A/1116:1118,
1/A/1155:1158,
1/A/1181:1184		No text annotation
J3_82365.5
J3_8B0X_0311/A/1116:1118,
1/A/1155:1161,
1/A/1175:1184		No text annotation
J3_40706.1
J3_8B0X_0131/A/1237:1241,
1/A/1296:1303,
1/A/1334:1337		No text annotation
J3_03192.1
J3_8B0X_0141/a/30:31,
1/a/474:481,
1/a/509:510		No text annotation
J3_68715.1
J3_8B0X_0321/a/30:31,
1/a/474:484,
1/a/496:510		No text annotation
J3_17917.1
J3_8B0X_0331/a/32:35,
1/a/445:461,
1/a/468:473		No text annotation
J3_07616.1
J3_8B0X_0151/a/56:57,
1/a/70:76,
1/a/110:114		No text annotation
J3_01004.1
J3_8B0X_0341/a/297:301,
1/a/316:325,
1/a/337:341		No text annotation
J3_77124.1
J3_8B0X_0161/a/685:691,
1/a/775:777,
1/a/793:796		No text annotation
J3_46658.1
J3_8B0X_0171/a/700:702,
1/a/734:738,
1/a/762:765		No text annotation
J3_69816.1
J3_8B0X_0181/a/1300:1305,
1/a/1627:1629,
1/a/1641:1644		No text annotation
J3_32852.7
J3_8B0X_0191/a/1308:1311,
1/a/1607:1613,
1/a/1622:1624		No text annotation
J3_47341.1
J3_8B0X_0201/a/1346:1351,
1/a/1384:1387,
1/a/1404:1405		No text annotation
homologous
J3_5J7L_043
NA
J3_8B0X_0351/a/1426:1431,
1/a/1566:1567,
1/a/1570:1576		No text annotation
J3_34864.3
J3_8B0X_0211/a/2095:2097,
1/a/2200:2204,
1/a/2227:2232		Kink-turn 3-way junction
J3_17460.1
J3_8B0X_0361/a/2286:2288,
1/a/2388:2399,
1/a/2425:2431		No text annotation
J3_04772.1
J3_8B0X_0221/a/2299:2301,
1/a/2325:2327,
1/a/2336:2341		No text annotation
J3_05327.1
J3_8B0X_0371/a/2299:2303,
1/a/2321:2327,
1/a/2336:2341		No text annotation
homologous
J3_5J7L_071
NA
J3_8B0X_0231/a/2521:2524,
1/a/2549:2551,
1/a/2565:2571		No text annotation
J3_32601.6
J3_8B0X_0241/a/2793:2795,
1/a/2809:2810,
1/a/2896:2898		No text annotation
homologous
J3_5J7L_047
NA
J3_8B0X_0251/a/2816:2819,
1/a/2835:2840,
1/a/2886:2892		No text annotation
homologous
J3_5J7L_048
NA
J3_8B0X_0261/b/10:16,
1/b/68:70,
1/b/106:110		No text annotation
homologous
J3_5J7L_049
NA
J4_8B0X_0011/A/115:122,
1/A/239:240,
1/A/286:289,
1/A/311:312		No text annotation
J4_90044.1
J4_8B0X_0021/A/142:144,
1/A/178:184,
1/A/193:198,
1/A/219:221		No text annotation
homologous
J4_5J7L_002
NA
J4_8B0X_0031/A/575:577,
1/A/764:769,
1/A/810:821,
1/A/879:880		No text annotation
J4_14595.1
J4_8B0X_0041/a/268:269,
1/a/370:375,
1/a/399:406,
1/a/421:424		No text annotation
J4_94698.1
J4_8B0X_0051/a/297:301,
1/a/316:319,
1/a/323:325,
1/a/337:341		No text annotation
J4_16174.1
J4_8B0X_0061/a/603:606,
1/a/626:630,
1/a/637:640,
1/a/652:658		No text annotation
homologous
J4_5J7L_020
NA
J4_8B0X_0071/a/1272:1278,
1/a/1296:1297,
1/a/1647:1650,
1/a/2013:2014		No text annotation
J4_64571.6
J4_8B0X_0081/a/1312:1316,
1/a/1340:1345,
1/a/1406:1407,
1/a/1599:1606		No text annotation
J4_77353.1
J4_8B0X_0091/a/1315:1316,
1/a/1340:1345,
1/a/1406:1407,
1/a/1599:1605		No text annotation
J4_48150.1
J4_8B0X_0101/a/1446:1447,
1/a/1468:1469,
1/a/1527:1528,
1/a/1548:1549		No text annotation
J4_75575.1
J4_8B0X_0111/a/1774:1778,
1/a/1790:1794,
1/a/1829:1832,
1/a/1979:1983		No text annotation
J4_61477.6
J4_8B0X_0121/a/1835:1837,
1/a/1909:1910,
1/a/1928:1937,
1/a/1971:1976		No text annotation
J4_42306.1
J4_8B0X_0131/a/2289:2293,
1/a/2347:2351,
1/a/2374:2376,
1/a/2385:2387		No text annotation
J4_98139.1
J4_8B0X_0141/a/2647:2650,
1/a/2678:2680,
1/a/2735:2739,
1/a/2773:2775		No text annotation
J4_77044.5
J5_8B0X_0011/A/36:39,
1/A/403:406,
1/A/436:440,
1/A/497:500,
1/A/545:548		No text annotation
homologous
J5_5J7L_001
NA
J5_8B0X_0021/A/36:39,
1/A/403:406,
1/A/436:442,
1/A/492:500,
1/A/545:548		No text annotation
homologous
J5_5J7L_002
NA
J5_8B0X_0031/A/58:61,
1/A/106:113,
1/A/314:316,
1/A/337:339,
1/A/350:354		No text annotation
J5_58574.1
J5_8B0X_0041/a/47:54,
1/a/116:121,
1/a/130:131,
1/a/148:150,
1/a/176:178		No text annotation
J5_27223.1
J5_8B0X_0051/a/531:533,
1/a/562:566,
1/a/579:581,
1/a/1263:1264,
1/a/2021:2022		No text annotation
J5_43153.6
J5_8B0X_0061/a/586:591,
1/a/670:673,
1/a/811:814,
1/a/1197:1198,
1/a/1252:1258		No text annotation
J5_74302.6
J5_8B0X_0071/a/1676:1684,
1/a/1708:1709,
1/a/1753:1754,
1/a/1758:1766,
1/a/1992:1994		No text annotation
J5_99177.1
J5_8B0X_0081/a/2061:2068,
1/a/2450:2457,
1/a/2504:2510,
1/a/2587:2592,
1/a/2610:2615		No text annotation
J5_27349.1
J5_8B0X_0091/a/2078:2081,
1/a/2247:2250,
1/a/2262:2263,
1/a/2285:2286,
1/a/2431:2439		No text annotation
J5_39529.2
J6_8B0X_0011/a/45:46,
1/a/179:183,
1/a/214:224,
1/a/231:235,
1/a/262:266,
1/a/426:433		No text annotation
J6_56891.1
J6_8B0X_0021/a/2078:2081,
1/a/2247:2250,
1/a/2262:2263,
1/a/2285:2288,
1/a/2388:2399,
1/a/2425:2439		No text annotation
J6_64525.2
J7_8B0X_0011/a/8:15,
1/a/525:531,
1/a/2022:2027,
1/a/2044:2047,
1/a/2629:2634,
1/a/2792:2793,
1/a/2898:2899		No text annotation
J7_8B0X_0021/a/819:824,
1/a/837:839,
1/a/944:948,
1/a/973:978,
1/a/989:993,
1/a/1165:1166,
1/a/1187:1192		No text annotation

Problematic loops

#loop idProblemSequence
J3_8B0X_011No text annotation

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