HL_8B0X_049

3D structure

PDB id

8B0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 70S ribosome in the unrotated state (P and E, tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

8B0X|1|a|U|617

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B0X_049 not in the Motif Atlas

Geometric match to HL_3DIL_003

Geometric discrepancy: 0.1589

The information below is about HL_3DIL_003

Detailed Annotation

GNRA

Broad Annotation

GNRA

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8B0X|1|a|C|613
8B0X|1|a|G|614
8B0X|1|a|A|615
8B0X|1|a|A|616
8B0X|1|a|U|617
8B0X|1|a|A|618
8B0X|1|a|G|619

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4