HL_8B0X_077

3D structure

PDB id

8B0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 70S ribosome in the unrotated state (P and E, tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

8B0X|1|a|U|1959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B0X_077 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0506

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8B0X|1|a|G|1953
8B0X|1|a|G|1954
8B0X|1|a|U|1955
8B0X|1|a|A|1956
8B0X|1|a|A|1957
8B0X|1|a|G|1958
8B0X|1|a|U|1959
8B0X|1|a|U|1960
8B0X|1|a|C|1961

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain j

50S ribosomal protein L14