HL_8B0X_086

3D structure

PDB id

8B0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 70S ribosome in the unrotated state (P and E, tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

8B0X|1|a|A|2410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B0X_086 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0512

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8B0X|1|a|U|2408
8B0X|1|a|G|2409
8B0X|1|a|A|2410
8B0X|1|a|A|2411
8B0X|1|a|U|2412
8B0X|1|a|G|2413
8B0X|1|a|G|2414
8B0X|1|a|A|2415
8B0X|1|a|A|2416
8B0X|1|a|G|2417

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L15