HL_8B2L_005

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUGGAAGG

Length

8 nucleotides

Bulged bases

8B2L|1|A3|G|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.0864

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8B2L|1|A3|C|191
8B2L|1|A3|U|192
8B2L|1|A3|G|193
8B2L|1|A3|G|194
8B2L|1|A3|A|195
8B2L|1|A3|A|196
8B2L|1|A3|G|197
8B2L|1|A3|G|198

Current chains

Chain A3

25S rRNA

Nearby chains

Chain R3

60S ribosomal protein L32-1

Chain m3

uL24 (60S ribosomal protein L26)

Chain s3

uL4 (60S ribosomal protein L4)