8B2L Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8B2L_001 | 1/A3/36:43 | No text annotation | homologous HL_5TBW_001 NA | |
| HL_8B2L_002 | 1/A3/67:72 | No text annotation | homologous HL_5TBW_002 NA | |
| HL_8B2L_003 | 1/A3/88:94 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_8B2L_004 | 1/A3/130:134 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_8B2L_005 | 1/A3/191:198 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_8B2L_006 | 1/A3/205:209 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_8B2L_007 | 1/A3/213:221 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_8B2L_008 | 1/A3/275:284 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_8B2L_009 | 1/A3/300:309 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_8B2L_010 | 1/A3/354:359 | GNRA | homologous HL_8C3A_010 NA | |
| HL_8B2L_011 | 1/A3/379:384 | GNRA | homologous HL_8C3A_011 NA | |
| HL_8B2L_115 | 1/A3/464:470 | GNRA | geometric HL_5J7L_211 NA | |
| HL_8B2L_013 | 1/A3/534:544 | No text annotation | geometric HL_5AMQ_001 HL_89167.4 | |
| HL_8B2L_014 | 1/A3/588:592 | No text annotation | geometric HL_5TBW_004 NA | |
| HL_8B2L_015 | 1/A3/598:603 | UNCG | geometric HL_4JF2_003 HL_61337.6 | |
| HL_8B2L_116 | 1/A3/651:660 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_8B2L_017 | 1/A3/697:706 | No text annotation | homologous HL_8C3A_015 NA | |
| HL_8B2L_018 | 1/A3/720:725 | GNRA | homologous HL_8C3A_016 NA | |
| HL_8B2L_019 | 1/A3/742:747 | No text annotation | geometric HL_4LFB_004 HL_89167.4 | |
| HL_8B2L_020 | 1/A3/773:778 | No text annotation | geometric HL_5TBW_018 NA | |
| HL_8B2L_021 | 1/A3/854:859 | GNRA | homologous HL_5TBW_019 NA | |
| HL_8B2L_117 | 1/A3/886:895 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_8B2L_023 | 1/A3/920:928 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_8B2L_024 | 1/A3/968:973 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_8B2L_026 | 1/A3/1088:1095 | No text annotation | geometric HL_5TBW_024 NA | |
| HL_8B2L_027 | 1/A3/1137:1143 | GNRA | geometric HL_4V9F_028 HL_34789.6 | |
| HL_8B2L_028 | 1/A3/1159:1166 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_8B2L_030 | 1/A3/1359:1369 | Mini UNCG | geometric HL_4OOG_001 HL_12626.2 | |
| HL_8B2L_031 | 1/A3/1414:1419 | GNRA | homologous HL_8C3A_030 NA | |
| HL_8B2L_032 | 1/A3/1473:1481 | T-loop with 2 stacked bulged bases | geometric HL_5TBW_031 NA | |
| HL_8B2L_033 | 1/A3/1516:1524 | No text annotation | geometric HL_1KH6_003 HL_33487.2 | |
| HL_8B2L_034 | 1/A3/1555:1560 | GNRA variation | homologous HL_5TBW_033 NA | |
| HL_8B2L_035 | 1/A3/1575:1579 | No text annotation | geometric HL_4V9F_003 HL_75660.10 | |
| HL_8B2L_036 | 1/A3/1604:1613 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_8B2L_037 | 1/A3/1638:1643 | GNRA | homologous HL_8C3A_036 NA | |
| HL_8B2L_129 | 1/A3/1684:1692 | Pseudoknot geometry | homologous HL_8P9A_148 NA | |
| HL_8B2L_039 | 1/A3/1724:1730 | No text annotation | geometric HL_5U3G_001 HL_75660.10 | |
| HL_8B2L_040 | 1/A3/1764:1772 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_8B2L_041 | 1/A3/1798:1802 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_8B2L_118 | 1/A3/1850:1857 | No text annotation | geometric HL_5TBW_041 NA | |
| HL_8B2L_042 | 1/A3/1868:1874 | GNRA | homologous HL_5TBW_042 NA | |
| HL_8B2L_043 | 1/A3/1929:1934 | UNCG | homologous HL_8C3A_043 NA | |
| HL_8B2L_045 | 1/A3/2114:2118 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_8B2L_119 | 1/A3/2139:2149 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_8B2L_047 | 1/A3/2168:2173 | GNRA | homologous HL_8C3A_047 NA | |
| HL_8B2L_120 | 1/A3/2223:2228 | GNRA | homologous HL_8P9A_159 NA | |
| HL_8B2L_049 | 1/A3/2256:2266 | No text annotation | homologous HL_5TBW_049 NA | |
| HL_8B2L_050 | 1/A3/2295:2303 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_8B2L_051 | 1/A3/2372:2381 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_8B2L_054 | 1/A3/2619:2627 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_8B2L_055 | 1/A3/2636:2648 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_8B2L_056 | 1/A3/2676:2684 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_8B2L_057 | 1/A3/2696:2703 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_8B2L_058 | 1/A3/2727:2735 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_8B2L_122 | 1/A3/2747:2752 | GNRA | homologous HL_8C3A_060 NA | |
| HL_8B2L_060 | 1/A3/2779:2787 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_8B2L_061 | 1/A3/2843:2851 | No text annotation | homologous HL_8C3A_062 NA | |
| HL_8B2L_062 | 1/A3/2900:2907 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_8B2L_063 | 1/A3/2923:2929 | No text annotation | geometric HL_2ZNI_001 HL_75660.10 | |
| HL_8B2L_064 | 1/A3/2966:2971 | GNRA | homologous HL_8C3A_065 NA | |
| HL_8B2L_065 | 1/A3/3027:3032 | GNRA | geometric HL_7A0S_063 HL_34789.6 | |
| HL_8B2L_066 | 1/A3/3070:3075 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_8B2L_067 | 1/A3/3112:3126 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_8B2L_068 | 1/A3/3190:3194 | Mini UNCG | geometric HL_5AH5_007 HL_90436.5 | |
| HL_8B2L_069 | 1/A3/3233:3240 | No text annotation | homologous HL_8C3A_070 NA | |
| HL_8B2L_070 | 1/A3/3295:3303 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_8B2L_123 | 1/B3/50:59 | No text annotation | homologous HL_8P9A_186 NA | |
| HL_8B2L_072 | 1/B3/72:92 | No text annotation | homologous HL_8P9A_187 NA | |
| HL_8B2L_073 | 1/B3/111:117 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_8B2L_074 | 1/B3/127:134 | No text annotation | ||
| HL_8B2L_124 | 1/C3/32:45 | No text annotation | homologous HL_4V9F_074 HL_97756.4 | |
| HL_8B2L_075 | 1/C3/36:41 | No text annotation | homologous HL_5J7L_203 NA | |
| HL_8B2L_076 | 1/C3/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_8B2L_077 | 1/W2/13:22 | tRNA D-loop | homologous HL_1QF6_001 HL_20490.1 | |
| HL_8B2L_078 | 1/W2/31:39 | tRNA anticodon loop | homologous HL_4V90_033 NA | |
| HL_8B2L_079 | 1/W2/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1QU2_003 HL_33597.6 | |
| HL_8B2L_080 | 1/h1/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_8B2L_081 | 1/h1/70:82 | No text annotation | geometric HL_7KI3_001 HL_75660.10 | |
| HL_8B2L_082 | 1/h1/152:158 | GNRA related | homologous HL_4V88_188 NA | |
| HL_8B2L_125 | 1/h1/246:253 | T-loop with 1 bulged base | homologous HL_8C3A_197 NA | |
| HL_8B2L_086 | 1/h1/334:342 | GNRA related | homologous HL_4V88_193 NA | |
| HL_8B2L_087 | 1/h1/372:377 | No text annotation | homologous HL_4V88_194 NA | |
| HL_8B2L_088 | 1/h1/397:408 | No text annotation | homologous HL_4V88_195 NA | |
| HL_8B2L_126 | 1/h1/418:423 | UNCG | homologous HL_8P9A_200 NA | |
| HL_8B2L_090 | 1/h1/454:460 | No text annotation | homologous HL_4V88_197 NA | |
| HL_8B2L_091 | 1/h1/523:535 | No text annotation | homologous HL_4V88_199 NA | |
| HL_8B2L_092 | 1/h1/572:577 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_8B2L_093 | 1/h1/768:776 | No text annotation | homologous HL_4V88_203 NA | |
| HL_8B2L_094 | 1/h1/781:786 | No text annotation | homologous HL_4V88_204 NA | |
| HL_8B2L_096 | 1/h1/903:912 | No text annotation | homologous HL_4V88_206 NA | |
| HL_8B2L_097 | 1/h1/940:945 | GNRA | homologous HL_4V88_207 NA | |
| HL_8B2L_098 | 1/h1/1000:1010 | No text annotation | homologous HL_4V88_208 NA | |
| HL_8B2L_100 | 1/h1/1087:1092 | GNRA | homologous HL_4V88_210 NA | |
| HL_8B2L_101 | 1/h1/1124:1129 | GNRA | homologous HL_4V88_211 NA | |
| HL_8B2L_102 | 1/h1/1191:1200 | No text annotation | homologous HL_8P9A_215 NA | |
| HL_8B2L_103 | 1/h1/1241:1250 | Anticodon loop related | homologous HL_4V88_213 NA | |
| HL_8B2L_127 | 1/h1/1299:1304 | GNRA | homologous HL_8P9A_217 NA | |
| HL_8B2L_105 | 1/h1/1312:1319 | No text annotation | homologous HL_4V88_215 NA | |
| HL_8B2L_106 | 1/h1/1363:1368 | No text annotation | ||
| HL_8B2L_107 | 1/h1/1401:1407 | UNCG variation | geometric HL_1P6V_001 NA | |
| HL_8B2L_108 | 1/h1/1508:1513 | GNRA | homologous HL_4V88_218 NA | |
| HL_8B2L_128 | 1/h1/1556:1567 | No text annotation | homologous HL_8C3A_224 NA | |
| HL_8B2L_110 | 1/h1/1600:1608 | No text annotation | homologous HL_4V88_220 NA | |
| HL_8B2L_111 | 1/h1/1786:1791 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_8B2L_112 | 1/i2/13:22 | No text annotation | homologous HL_5HR6_001 HL_78347.5 | |
| HL_8B2L_113 | 1/i2/31:39 | tRNA anticodon loop | homologous HL_7U2I_104 NA | |
| HL_8B2L_114 | 1/i2/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6UGG_006 HL_33597.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8B2L_012 | tRNA anticodon loop | ||
| HL_8B2L_016 | No text annotation | ||
| HL_8B2L_022 | No text annotation | ||
| HL_8B2L_025 | GNRA | ||
| HL_8B2L_029 | No text annotation | ||
| HL_8B2L_038 | tRNA D-loop | ||
| HL_8B2L_044 | No text annotation | ||
| HL_8B2L_046 | No text annotation | ||
| HL_8B2L_048 | GNRA with extra cWW | ||
| HL_8B2L_121 | No text annotation | ||
| HL_8B2L_130 | No text annotation | ||
| HL_8B2L_052 | No text annotation | ||
| HL_8B2L_053 | No text annotation | ||
| HL_8B2L_059 | GNRA with extra cWW | ||
| HL_8B2L_071 | Mini UNCG | ||
| HL_8B2L_083 | Mini UNCG | ||
| HL_8B2L_084 | No text annotation | ||
| HL_8B2L_085 | Mini UNCG | ||
| HL_8B2L_089 | No text annotation | ||
| HL_8B2L_095 | No text annotation | ||
| HL_8B2L_099 | No text annotation | ||
| HL_8B2L_104 | GNRA with extra near cWW | ||
| HL_8B2L_109 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8B2L_001 | 1/A3/1:3, 1/B3/159:161 | Isolated non-canonical cWW pair | geometric IL_4LFB_061 NA | |
| IL_8B2L_002 | 1/A3/5:6, 1/B3/155:157 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_8B2L_003 | 1/A3/11:13, 1/B3/149:150 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_8B2L_004 | 1/A3/25:26, 1/A3/54:56 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_8B2L_005 | 1/A3/29:36, 1/A3/43:51 | tSH-tHW-tHH-tHS | geometric IL_5TBW_005 NA | |
| IL_8B2L_006 | 1/A3/80:88, 1/A3/94:101 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_93502.3 | |
| IL_8B2L_007 | 1/A3/121:122, 1/A3/142:147 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_8B2L_008 | 1/A3/157:158, 1/A3/257:259 | Single bulged G | geometric IL_5TBW_037 NA | |
| IL_8B2L_009 | 1/A3/162:164, 1/A3/252:253 | Major groove platform | geometric IL_7RQB_090 NA | |
| IL_8B2L_010 | 1/A3/166:168, 1/A3/244:250 | No text annotation | ||
| IL_8B2L_011 | 1/A3/174:176, 1/A3/234:238 | No text annotation | geometric IL_7ENI_001 IL_70784.2 | |
| IL_8B2L_012 | 1/A3/181:183, 1/A3/227:229 | Not an internal loop | geometric IL_5VCI_005 NA | |
| IL_8B2L_013 | 1/A3/186:188, 1/A3/201:202 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_8B2L_015 | 1/A3/334:336, 1/B3/28:29 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_8B2L_016 | 1/A3/373:376, 1/A3/387:400 | No text annotation | homologous IL_8C3A_015 NA | |
| IL_8B2L_017 | 1/A3/401:407, 1/B3/16:22 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_8B2L_019 | 1/A3/430:431, 1/A3/635:637 | Single bulged U | geometric IL_6JQ6_006 IL_97561.7 | |
| IL_8B2L_020 | 1/A3/433:436, 1/A3/632:633 | Stack outside cWW | geometric IL_4KZD_006 IL_77710.2 | |
| IL_8B2L_021 | 1/A3/447:448, 1/A3/487:489 | Single bulged U | geometric IL_7KVT_002 IL_97561.7 | |
| IL_8B2L_022 | 1/A3/451:455, 1/A3/479:484 | No text annotation | ||
| IL_8B2L_023 | 1/A3/459:461, 1/A3/473:475 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_8B2L_024 | 1/A3/498:500, 1/A3/626:628 | Isolated non-canonical cWW pair | geometric IL_3MEI_002 IL_01003.6 | |
| IL_8B2L_026 | 1/A3/522:528, 1/A3/551:555 | Partly complementary | geometric IL_8D29_010 IL_71154.5 | |
| IL_8B2L_027 | 1/A3/529:530, 1/A3/548:550 | Single bulged U | geometric IL_5TBW_093 NA | |
| IL_8B2L_028 | 1/A3/595:597, 1/A3/604:607 | Isolated non-canonical cWW pair | geometric IL_3TD0_001 NA | |
| IL_8B2L_269 | 1/A3/679:681, 1/A3/802:804 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_8B2L_031 | 1/A3/691:695, 1/A3/708:713 | No text annotation | ||
| IL_8B2L_032 | 1/A3/735:739, 1/A3/750:755 | Triple sheared related | geometric IL_4V9F_018 IL_51313.1 | |
| IL_8B2L_033 | 1/A3/762:763, 1/A3/789:791 | Single bulged A | homologous IL_5TBW_024 NA | |
| IL_8B2L_270 | 1/A3/765:766, 1/A3/785:787 | Single bulged U | homologous IL_8C3A_027 NA | |
| IL_8B2L_035 | 1/A3/767:773, 1/A3/778:784 | No text annotation | ||
| IL_8B2L_271 | 1/A3/813:815, 1/A3/948:950 | Isolated non-canonical cWW pair | homologous IL_8P9A_255 NA | |
| IL_8B2L_272 | 1/A3/815:819, 1/A3/941:948 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_8B2L_037 | 1/A3/838:839, 1/A3/905:907 | Single bulged A | geometric IL_7A0S_016 IL_14190.4 | |
| IL_8B2L_038 | 1/A3/843:844, 1/A3/869:871 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_8B2L_039 | 1/A3/844:848, 1/A3/865:869 | Triple sheared | geometric IL_4V9F_027 IL_15190.4 | |
| IL_8B2L_040 | 1/A3/879:882, 1/A3/898:900 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_8B2L_041 | 1/A3/883:885, 1/A3/896:897 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_8B2L_042 | 1/A3/917:919, 1/A3/929:933 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_8B2L_273 | 1/A3/964:966, 1/A3/975:977 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_8B2L_044 | 1/A3/979:980, 1/A3/1122:1124 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_8B2L_045 | 1/A3/987:994, 1/A3/1112:1115 | No text annotation | ||
| IL_8B2L_046 | 1/A3/995:997, 1/A3/1110:1111 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_8B2L_274 | 1/A3/1003:1009, 1/A3/1064:1070 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_8P9A_266 NA | |
| IL_8B2L_275 | 1/A3/1009:1010, 1/A3/1062:1064 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_8B2L_276 | 1/A3/1011:1016, 1/A3/1058:1061 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_8B2L_277 | 1/A3/1018:1021, 1/A3/1053:1056 | No text annotation | homologous IL_8C3A_481 NA | |
| IL_8B2L_051 | 1/A3/1021:1023, 1/A3/1051:1053 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_8B2L_052 | 1/A3/1025:1030, 1/A3/1046:1049 | Other IL | homologous IL_5TBW_043 NA | |
| IL_8B2L_053 | 1/A3/1086:1088, 1/A3/1095:1096 | Single bulged G | homologous IL_8C3A_048 NA | |
| IL_8B2L_278 | 1/A3/1131:1133, 1/A3/1147:1149 | Isolated non-canonical cWW pair | homologous IL_8P9A_274 NA | |
| IL_8B2L_055 | 1/A3/1178:1182, 1/A3/1340:1344 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_8B2L_056 | 1/A3/1184:1191, 1/A3/1337:1338 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_8B2L_057 | 1/A3/1191:1193, 1/A3/1336:1337 | Single bulged U | geometric IL_7RQB_038 NA | |
| IL_8B2L_058 | 1/A3/1198:1206, 1/A3/1326:1331 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_8B2L_059 | 1/A3/1206:1217, 1/A3/1311:1326 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_8B2L_060 | 1/A3/1219:1221, 1/A3/1308:1309 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_8B2L_061 | 1/A3/1226:1228, 1/A3/1301:1303 | Isolated cWH basepair | geometric IL_4J50_003 IL_10892.4 | |
| IL_8B2L_062 | 1/A3/1388:1390, 1/A3/1439:1442 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_8B2L_063 | 1/A3/1399:1407, 1/A3/1425:1430 | No text annotation | ||
| IL_8B2L_064 | 1/A3/1409:1411, 1/A3/1422:1423 | Single bulged U | geometric IL_5TBW_134 NA | |
| IL_8B2L_280 | 1/A3/1455:1461, 1/A3/2357:2362 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_8P9A_289 NA | |
| IL_8B2L_068 | 1/A3/1499:1502, 1/A3/1843:1860 | No text annotation | ||
| IL_8B2L_069 | 1/A3/1503:1506, 1/A3/1841:1842 | Major groove platform; stack outside cWW | geometric IL_4V9F_050 IL_74641.4 | |
| IL_8B2L_070 | 1/A3/1512:1516, 1/A3/1524:1526 | Minor groove platform | geometric IL_4LFB_037 IL_03866.1 | |
| IL_8B2L_071 | 1/A3/1543:1547, 1/A3/1590:1595 | UAA/GAN | homologous IL_5TBW_063 NA | |
| IL_8B2L_072 | 1/A3/1548:1549, 1/A3/1587:1589 | Single bulged U | geometric IL_7KVT_002 IL_97561.7 | |
| IL_8B2L_073 | 1/A3/1551:1552, 1/A3/1565:1567 | No text annotation | ||
| IL_8B2L_074 | 1/A3/1552:1553, 1/A3/1562:1565 | Major groove platform | geometric IL_4WF9_094 IL_46637.4 | |
| IL_8B2L_076 | 1/A3/1623:1625, 1/A3/1831:1832 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_8B2L_077 | 1/A3/1628:1629, 1/A3/1826:1828 | Single bulged C | geometric IL_3HHN_003 IL_05642.5 | |
| IL_8B2L_078 | 1/A3/1632:1635, 1/A3/1817:1823 | No text annotation | ||
| IL_8B2L_079 | 1/A3/1649:1653, 1/A3/1812:1816 | Triple sheared | homologous IL_5TBW_067 NA | |
| IL_8B2L_080 | 1/A3/1665:1667, 1/A3/1792:1794 | Isolated cWH basepair | geometric IL_5F5F_003 IL_10892.4 | |
| IL_8B2L_081 | 1/A3/1673:1674, 1/A3/1784:1786 | Single bulged C | geometric IL_5TBW_069 NA | |
| IL_8B2L_082 | 1/A3/1674:1675, 1/A3/1782:1784 | Single stack bend | homologous IL_8C3A_076 NA | |
| IL_8B2L_083 | 1/A3/1679:1681, 1/A3/1695:1697 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_8B2L_084 | 1/A3/1698:1702, 1/A3/1752:1757 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_8B2L_085 | 1/A3/1706:1707, 1/A3/1746:1748 | Single bulged C | geometric IL_1DQH_001 NA | |
| IL_8B2L_086 | 1/A3/1707:1712, 1/A3/1742:1746 | No text annotation | ||
| IL_8B2L_087 | 1/A3/1716:1722, 1/A3/1732:1738 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_8B2L_088 | 1/A3/1889:1895, 1/A3/2349:2352 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_8B2L_089 | 1/A3/1901:1903, 1/A3/2341:2343 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_8B2L_281 | 1/A3/1904:1907, 1/A3/2339:2340 | Major groove platform; stack outside cWW | geometric IL_8C3A_082 NA | |
| IL_8B2L_282 | 1/A3/1904:1912, 1/A3/2336:2340 | No text annotation | homologous IL_8P9A_305 NA | |
| IL_8B2L_091 | 1/A3/1907:1912, 1/A3/2336:2339 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_8B2L_092 | 1/A3/1924:1929, 1/A3/1934:1940 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_8B2L_093 | 1/A3/1946:1948, 1/A3/2110:2112 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_8B2L_094 | 1/A3/1953:1954, 1/A3/2102:2105 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_8B2L_097 | 1/A3/2132:2133, 1/A3/2326:2328 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_8B2L_098 | 1/A3/2160:2165, 1/A3/2176:2183 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_8B2L_100 | 1/A3/2199:2202, 1/A3/2248:2249 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_8B2L_101 | 1/A3/2203:2204, 1/A3/2244:2247 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_8B2L_102 | 1/A3/2207:2209, 1/A3/2240:2241 | Single bulged U | homologous IL_5TBW_086 NA | |
| IL_8B2L_103 | 1/A3/2209:2213, 1/A3/2238:2240 | Major groove platform with extra pair | geometric IL_5TBW_087 NA | |
| IL_8B2L_283 | 1/A3/2214:2220, 1/A3/2231:2237 | No text annotation | homologous IL_8P9A_316 NA | |
| IL_8B2L_107 | 1/A3/2279:2280, 1/A3/2310:2313 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_8B2L_284 | 1/A3/2280:2291, 1/A3/2307:2310 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_8B2L_285 | 1/A3/2394:2397, 1/A3/2989:2991 | No text annotation | homologous IL_8P9A_319 NA | |
| IL_8B2L_111 | 1/A3/2399:2401, 1/A3/2984:2987 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_8B2L_286 | 1/A3/2412:2414, 1/A3/2814:2815 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_8B2L_113 | 1/A3/2415:2416, 1/A3/2810:2813 | Minor groove platform | homologous IL_8C3A_099 NA | |
| IL_8B2L_115 | 1/A3/2426:2428, 1/A3/2607:2610 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_8B2L_116 | 1/A3/2430:2432, 1/A3/2603:2605 | Isolated non-canonical cWW pair | geometric IL_6IA2_005 IL_01003.6 | |
| IL_8B2L_117 | 1/A3/2447:2451, 1/A3/2503:2508 | No text annotation | ||
| IL_8B2L_121 | 1/A3/2525:2531, 1/A3/2587:2590 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_8B2L_122 | 1/A3/2617:2618, 1/A3/2628:2630 | Single bulged A | homologous IL_8C3A_107 NA | |
| IL_8B2L_287 | 1/A3/2631:2633, 1/A3/2651:2653 | Isolated non-canonical cWW contact | geometric IL_7Y2B_002 NA | |
| IL_8B2L_123 | 1/A3/2669:2671, 1/A3/2689:2693 | No text annotation | homologous IL_8C3A_108 NA | |
| IL_8B2L_125 | 1/A3/2717:2719, 1/A3/2743:2744 | Single bulged A | geometric IL_5TBW_013 NA | |
| IL_8B2L_288 | 1/A3/2721:2724, 1/A3/2738:2741 | Tandem non-canonical cWW pairs | homologous IL_8P9A_327 NA | |
| IL_8B2L_129 | 1/A3/2773:2776, 1/A3/2790:2791 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_8B2L_289 | 1/A3/2826:2829, 1/A3/2866:2870 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_8B2L_290 | 1/A3/2829:2831, 1/A3/2865:2866 | No text annotation | homologous IL_8P9A_331 NA | |
| IL_8B2L_131 | 1/A3/2831:2833, 1/A3/2861:2865 | Major groove minor groove platform with extra cWW | homologous IL_5TBW_105 NA | |
| IL_8B2L_133 | 1/A3/2838:2842, 1/A3/2852:2856 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_8B2L_134 | 1/A3/2879:2880, 1/A3/2952:2954 | Major groove platform | geometric IL_4V9F_086 IL_46637.4 | |
| IL_8B2L_291 | 1/A3/2882:2884, 1/A3/2946:2950 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_8B2L_136 | 1/A3/2884:2885, 1/A3/2943:2946 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_8B2L_138 | 1/A3/2894:2896, 1/A3/2911:2915 | No text annotation | geometric IL_3DD2_004 IL_09353.2 | |
| IL_8B2L_141 | 1/A3/2921:2923, 1/A3/2929:2931 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
| IL_8B2L_143 | 1/A3/2963:2964, 1/A3/2973:2975 | Single bulged A | homologous IL_5TBW_113 NA | |
| IL_8B2L_144 | 1/A3/3006:3009, 1/A3/3141:3145 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_8B2L_145 | 1/A3/3014:3016, 1/A3/3042:3044 | Isolated non-canonical cWW pair | homologous IL_5TBW_115 NA | |
| IL_8B2L_146 | 1/A3/3020:3027, 1/A3/3032:3038 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_8B2L_147 | 1/A3/3049:3053, 1/A3/3093:3096 | Major groove minor groove platform with tHH | homologous IL_5TBW_117 NA | |
| IL_8B2L_148 | 1/A3/3056:3061, 1/A3/3086:3090 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_8B2L_149 | 1/A3/3065:3066, 1/A3/3079:3082 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_8B2L_150 | 1/A3/3105:3109, 1/A3/3129:3133 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_8B2L_151 | 1/A3/3164:3166, 1/A3/3274:3276 | Isolated non-canonical cWW pair | homologous IL_8C3A_130 NA | |
| IL_8B2L_152 | 1/A3/3167:3169, 1/A3/3271:3273 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_01003.6 | |
| IL_8B2L_153 | 1/A3/3174:3176, 1/A3/3205:3206 | Single bulged A | geometric IL_4R4V_004 IL_14190.4 | |
| IL_8B2L_154 | 1/A3/3177:3185, 1/A3/3199:3204 | No text annotation | ||
| IL_8B2L_156 | 1/A3/3219:3223, 1/A3/3250:3252 | No text annotation | geometric IL_2OEU_001 IL_24466.1 | |
| IL_8B2L_158 | 1/A3/3292:3295, 1/A3/3303:3306 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_8B2L_159 | 1/A3/3310:3312, 1/A3/3380:3381 | Single bulged U | homologous IL_8C3A_136 NA | |
| IL_8B2L_160 | 1/A3/3316:3317, 1/A3/3373:3376 | Minor groove platform | geometric IL_3RW6_003 IL_41261.1 | |
| IL_8B2L_161 | 1/A3/3320:3322, 1/A3/3365:3370 | Isolated non-canonical cWW pair | homologous IL_5TBW_132 NA | |
| IL_8B2L_162 | 1/A3/3324:3329, 1/A3/3359:3363 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_8B2L_163 | 1/A3/3332:3334, 1/A3/3355:3356 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_8B2L_164 | 1/A3/3334:3337, 1/A3/3352:3355 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_8B2L_165 | 1/A3/3341:3342, 1/A3/3345:3348 | Multiple bulged bases | geometric IL_5TBW_136 NA | |
| IL_8B2L_167 | 1/B3/47:67, 1/B3/99:103 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_8B2L_168 | 1/B3/67:68, 1/B3/97:99 | No text annotation | ||
| IL_8B2L_170 | 1/B3/71:72, 1/B3/92:94 | Single bulged U | homologous IL_5TBW_146 NA | |
| IL_8B2L_171 | 1/B3/122:126, 1/B3/135:139 | Double sheared with non-canonical cWW | geometric IL_4WFL_001 IL_87767.4 | |
| IL_8B2L_172 | 1/C3/15:16, 1/C3/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_8B2L_173 | 1/C3/20:27, 1/C3/52:58 | No text annotation | homologous IL_4WF9_113 IL_01750.1 | |
| IL_8B2L_174 | 1/C3/28:29, 1/C3/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 NA | |
| IL_8B2L_175 | 1/C3/32:36, 1/C3/41:45 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_8B2L_176 | 1/C3/70:78, 1/C3/98:105 | No text annotation | ||
| IL_8B2L_177 | 1/C3/82:85, 1/C3/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_8B2L_178 | 1/W2/4:6, 1/W2/67:69 | No text annotation | homologous IL_4WSM_370 NA | |
| IL_8B2L_292 | 1/h1/24:26, 1/h1/603:604 | Single bulged C | homologous IL_8P9A_373 NA | |
| IL_8B2L_181 | 1/h1/35:37, 1/h1/475:477 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_8B2L_293 | 1/h1/37:41, 1/h1/470:475 | Triple sheared related | homologous IL_8C3A_394 NA | |
| IL_8B2L_182 | 1/h1/42:48, 1/h1/435:437 | No text annotation | homologous IL_4V88_387 NA | |
| IL_8B2L_183 | 1/h1/50:52, 1/h1/432:433 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_8B2L_184 | 1/h1/58:63, 1/h1/88:90 | No text annotation | homologous IL_4V88_389 NA | |
| IL_8B2L_294 | 1/h1/64:69, 1/h1/83:87 | No text annotation | homologous IL_8C3A_398 NA | |
| IL_8B2L_295 | 1/h1/110:113, 1/h1/306:309 | Tandem non-canonical cWW pairs | homologous IL_8C3A_399 NA | |
| IL_8B2L_188 | 1/h1/114:117, 1/h1/304:305 | Multiple bulged bases | homologous IL_4V88_392 NA | |
| IL_8B2L_296 | 1/h1/118:123, 1/h1/299:303 | No text annotation | homologous IL_8P9A_382 NA | |
| IL_8B2L_190 | 1/h1/141:147, 1/h1/163:170 | tWH-tWH-tHW-tHW | geometric IL_4V88_394 NA | |
| IL_8B2L_191 | 1/h1/147:150, 1/h1/160:163 | Tandem non-canonical cWW pairs | geometric IL_3WBM_002 IL_37443.2 | |
| IL_8B2L_192 | 1/h1/184:187, 1/h1/193:196 | Double sheared | homologous IL_4V88_396 NA | |
| IL_8B2L_193 | 1/h1/201:202, 1/h1/264:266 | Single bulged A | geometric IL_4V88_399 NA | |
| IL_8B2L_194 | 1/h1/202:203, 1/h1/262:264 | Single bulged C | geometric IL_3W3S_001 IL_05642.5 | |
| IL_8B2L_195 | 1/h1/203:205, 1/h1/260:262 | Isolated non-canonical cWW pair | homologous IL_4V88_398 NA | |
| IL_8B2L_197 | 1/h1/268:270, 1/h1/292:293 | Single bulged A | homologous IL_4V88_399 NA | |
| IL_8B2L_198 | 1/h1/273:276, 1/h1/287:289 | No text annotation | homologous IL_4V88_400 NA | |
| IL_8B2L_199 | 1/h1/315:320, 1/h1/352:359 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_8B2L_200 | 1/h1/322:327, 1/h1/349:350 | No text annotation | homologous IL_4V88_403 NA | |
| IL_8B2L_201 | 1/h1/367:369, 1/h1/380:385 | No text annotation | homologous IL_4V88_404 NA | |
| IL_8B2L_202 | 1/h1/393:395, 1/h1/410:412 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_8B2L_297 | 1/h1/415:417, 1/h1/424:426 | Isolated non-canonical cWW pair | homologous IL_8C3A_414 NA | |
| IL_8B2L_298 | 1/h1/443:445, 1/h1/467:468 | Single bulged U | homologous IL_8P9A_396 NA | |
| IL_8B2L_299 | 1/h1/447:451, 1/h1/464:465 | C-loop | homologous IL_8P9A_397 NA | |
| IL_8B2L_300 | 1/h1/451:452, 1/h1/462:464 | Single bulged G | homologous IL_8P9A_398 NA | |
| IL_8B2L_204 | 1/h1/485:486, 1/h1/508:510 | Single bulged A | homologous IL_4V88_409 NA | |
| IL_8B2L_205 | 1/h1/517:519, 1/h1/539:546 | No text annotation | homologous IL_8C3A_420 NA | |
| IL_8B2L_301 | 1/h1/520:521, 1/h1/536:538 | Minor groove platform | homologous IL_8C3A_501 NA | |
| IL_8B2L_207 | 1/h1/521:523, 1/h1/535:536 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_8B2L_208 | 1/h1/553:560, 1/h1/590:591 | SSU/LSU pseudoknot | geometric IL_4V88_413 NA | |
| IL_8B2L_209 | 1/h1/560:562, 1/h1/589:590 | Single bulged U | geometric IL_3D2V_001 IL_97561.7 | |
| IL_8B2L_210 | 1/h1/565:571, 1/h1/578:586 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_8B2L_211 | 1/h1/617:619, 1/h1/1108:1110 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_01003.6 | |
| IL_8B2L_212 | 1/h1/619:625, 1/h1/1107:1108 | No text annotation | homologous IL_4V88_416 NA | |
| IL_8B2L_213 | 1/h1/627:629, 1/h1/976:978 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_8B2L_214 | 1/h1/630:634, 1/h1/971:975 | tSH-tWH-tHS | homologous IL_4V88_418 NA | |
| IL_8B2L_302 | 1/h1/750:751, 1/h1/806:809 | Major groove minor groove platform; mini C-loop | homologous IL_8C3A_430 NA | |
| IL_8B2L_217 | 1/h1/752:754, 1/h1/803:805 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_8B2L_303 | 1/h1/755:763, 1/h1/795:802 | No text annotation | homologous IL_8C3A_503 NA | |
| IL_8B2L_221 | 1/h1/868:869, 1/h1/965:968 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_8B2L_304 | 1/h1/871:872, 1/h1/961:963 | Single bulged U | geometric IL_6UFH_004 IL_97561.7 | |
| IL_8B2L_223 | 1/h1/874:877, 1/h1/956:959 | Tandem non-canonical cWW pairs | geometric IL_4V88_430 NA | |
| IL_8B2L_224 | 1/h1/877:881, 1/h1/953:956 | Tandem non-canonical cWW pairs | homologous IL_4V88_431 NA | |
| IL_8B2L_225 | 1/h1/888:891, 1/h1/927:930 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_8B2L_305 | 1/h1/898:902, 1/h1/913:920 | Kink-turn | geometric IL_4V88_434 NA | |
| IL_8B2L_227 | 1/h1/988:993, 1/h1/1017:1019 | Other IL | homologous IL_4V88_435 NA | |
| IL_8B2L_228 | 1/h1/993:997, 1/h1/1013:1017 | tSH-tWH-tHS | geometric IL_4V88_436 NA | |
| IL_8B2L_230 | 1/h1/1037:1039, 1/h1/1098:1104 | No text annotation | homologous IL_4V88_437 NA | |
| IL_8B2L_231 | 1/h1/1044:1047, 1/h1/1077:1080 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
| IL_8B2L_232 | 1/h1/1054:1056, 1/h1/1069:1070 | Single stack bend | geometric IL_4C7O_002 IL_15011.5 | |
| IL_8B2L_233 | 1/h1/1058:1060, 1/h1/1066:1067 | Single bulged G | geometric IL_5TBW_037 NA | |
| IL_8B2L_234 | 1/h1/1114:1121, 1/h1/1132:1137 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_8B2L_235 | 1/h1/1149:1150, 1/h1/1636:1638 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_8B2L_306 | 1/h1/1152:1154, 1/h1/1633:1634 | Single bulged G | homologous IL_8C3A_448 NA | |
| IL_8B2L_237 | 1/h1/1160:1163, 1/h1/1623:1627 | C-loop | geometric IL_1KOG_007 IL_63596.14 | |
| IL_8B2L_307 | 1/h1/1176:1178, 1/h1/1469:1471 | Isolated non-canonical cWW pair | homologous IL_8P9A_432 NA | |
| IL_8B2L_239 | 1/h1/1181:1182, 1/h1/1464:1466 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_8B2L_308 | 1/h1/1216:1218, 1/h1/1453:1455 | Isolated non-canonical cWW pair | geometric IL_4PCJ_002 IL_71625.5 | |
| IL_8B2L_240 | 1/h1/1227:1236, 1/h1/1255:1262 | No text annotation | homologous IL_8P9A_470 NA | |
| IL_8B2L_241 | 1/h1/1237:1239, 1/h1/1252:1254 | No text annotation | homologous IL_4V88_448 NA | |
| IL_8B2L_309 | 1/h1/1271:1273, 1/h1/1445:1446 | Single bulged U | homologous IL_8C3A_455 NA | |
| IL_8B2L_243 | 1/h1/1275:1279, 1/h1/1441:1443 | Isolated cWS basepair | homologous IL_4V88_450 NA | |
| IL_8B2L_310 | 1/h1/1275:1281, 1/h1/1435:1443 | No text annotation | homologous IL_8P9A_439 NA | |
| IL_8B2L_244 | 1/h1/1279:1281, 1/h1/1435:1441 | Minor groove platform with extra cWW | geometric IL_4V88_451 NA | |
| IL_8B2L_311 | 1/h1/1283:1284, 1/h1/1431:1433 | Single bulged A | homologous IL_8C3A_458 NA | |
| IL_8B2L_312 | 1/h1/1293:1295, 1/h1/1326:1328 | Isolated cWH basepair | homologous IL_8P9A_442 NA | |
| IL_8B2L_247 | 1/h1/1309:1311, 1/h1/1320:1321 | Minor groove platform | homologous IL_4V88_454 NA | |
| IL_8B2L_248 | 1/h1/1342:1345, 1/h1/1388:1390 | Isolated non-canonical cWW pair | homologous IL_4V88_455 NA | |
| IL_8B2L_249 | 1/h1/1348:1351, 1/h1/1382:1385 | Minor groove platform | homologous IL_4V88_456 NA | |
| IL_8B2L_250 | 1/h1/1354:1356, 1/h1/1375:1379 | Isolated non-canonical cWW pair | geometric IL_3TD0_005 NA | |
| IL_8B2L_251 | 1/h1/1394:1397, 1/h1/1411:1417 | No text annotation | geometric IL_5J7L_053 NA | |
| IL_8B2L_252 | 1/h1/1482:1484, 1/h1/1534:1536 | Stack and bulge | geometric IL_2O3X_001 IL_53541.1 | |
| IL_8B2L_314 | 1/h1/1484:1492, 1/h1/1526:1534 | No text annotation | ||
| IL_8B2L_253 | 1/h1/1493:1501, 1/h1/1520:1525 | 180 degree turn | geometric IL_5J7L_055 NA | |
| IL_8B2L_254 | 1/h1/1503:1505, 1/h1/1516:1518 | Isolated non-canonical cWW pair | geometric IL_3RW6_004 IL_01003.6 | |
| IL_8B2L_255 | 1/h1/1546:1551, 1/h1/1572:1577 | No text annotation | homologous IL_4V88_462 NA | |
| IL_8B2L_256 | 1/h1/1642:1644, 1/h1/1772:1775 | No text annotation | homologous IL_4V88_463 NA | |
| IL_8B2L_257 | 1/h1/1644:1647, 1/h1/1768:1772 | No text annotation | homologous IL_8P9A_453 NA | |
| IL_8B2L_258 | 1/h1/1648:1650, 1/h1/1765:1767 | Isolated non-canonical cWW pair | homologous IL_4V88_465 NA | |
| IL_8B2L_259 | 1/h1/1650:1652, 1/h1/1762:1765 | Decoding loop related | geometric IL_5Z1I_002 NA | |
| IL_8B2L_315 | 1/h1/1656:1658, 1/h1/1756:1758 | Isolated non-canonical cWW pair | homologous IL_8C3A_474 NA | |
| IL_8B2L_261 | 1/h1/1659:1662, 1/h1/1752:1755 | Double sheared | geometric IL_4V88_468 NA | |
| IL_8B2L_262 | 1/h1/1662:1664, 1/h1/1751:1752 | Single bulged U | homologous IL_4V88_469 NA | |
| IL_8B2L_263 | 1/h1/1670:1673, 1/h1/1742:1745 | Tandem non-canonical cWW pairs | geometric IL_4EYA_003 IL_71194.4 | |
| IL_8B2L_264 | 1/h1/1675:1678, 1/h1/1737:1740 | Double sheared | homologous IL_4V88_471 NA | |
| IL_8B2L_265 | 1/h1/1681:1684, 1/h1/1731:1734 | Tandem non-canonical cWW pairs | geometric IL_5TBW_128 NA | |
| IL_8B2L_266 | 1/h1/1684:1688, 1/h1/1727:1731 | Triple sheared | homologous IL_4V88_474 NA | |
| IL_8B2L_268 | 1/i2/4:6, 1/i2/67:69 | No text annotation | homologous IL_4WSM_380 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8B2L_014 | Stack and bulge | ||
| IL_8B2L_018 | Isolated non-canonical cWW pair | ||
| IL_8B2L_025 | Intercalated cWW | ||
| IL_8B2L_029 | Tandem non-canonical cWW pairs | ||
| IL_8B2L_030 | Not an internal loop | ||
| IL_8B2L_034 | Isolated non-canonical cWW pair | ||
| IL_8B2L_036 | No text annotation | ||
| IL_8B2L_043 | Tandem non-canonical cWW pairs | ||
| IL_8B2L_047 | Stack and bulge | ||
| IL_8B2L_048 | No text annotation | ||
| IL_8B2L_049 | No text annotation | ||
| IL_8B2L_050 | No text annotation | ||
| IL_8B2L_054 | No text annotation | ||
| IL_8B2L_279 | No text annotation | ||
| IL_8B2L_065 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge | ||
| IL_8B2L_066 | Not an internal loop | ||
| IL_8B2L_067 | Isolated non-canonical cWW pair | ||
| IL_8B2L_075 | Isolated non-canonical cWW pair | ||
| IL_8B2L_090 | Major groove platform with extra pair | ||
| IL_8B2L_095 | Isolated non-canonical cWW pair | ||
| IL_8B2L_096 | Isolated non-canonical cWW pair | ||
| IL_8B2L_099 | Stack and bulge | ||
| IL_8B2L_104 | No text annotation | ||
| IL_8B2L_105 | Not an internal loop | ||
| IL_8B2L_106 | Not an internal loop | ||
| IL_8B2L_108 | No text annotation | ||
| IL_8B2L_109 | No text annotation | ||
| IL_8B2L_110 | Isolated non-canonical cWW pair | ||
| IL_8B2L_112 | No text annotation | ||
| IL_8B2L_114 | Isolated non-canonical cWW pair | ||
| IL_8B2L_118 | Isolated cWS basepair | ||
| IL_8B2L_119 | No text annotation | ||
| IL_8B2L_120 | No text annotation | ||
| IL_8B2L_124 | Isolated non-canonical cWW pair | ||
| IL_8B2L_126 | Isolated non-canonical cWW pair | ||
| IL_8B2L_127 | No text annotation | ||
| IL_8B2L_128 | Isolated non-canonical cWW pair | ||
| IL_8B2L_130 | No text annotation | ||
| IL_8B2L_132 | Not an internal loop | ||
| IL_8B2L_135 | No text annotation | ||
| IL_8B2L_137 | Stack and bulge | ||
| IL_8B2L_139 | Not an internal loop | ||
| IL_8B2L_140 | Isolated non-canonical cWW pair | ||
| IL_8B2L_142 | No text annotation | ||
| IL_8B2L_155 | Isolated cWH basepair | ||
| IL_8B2L_157 | Not an internal loop | ||
| IL_8B2L_166 | Isolated cWH basepair | ||
| IL_8B2L_169 | Stack and bulge | ||
| IL_8B2L_179 | Isolated non-canonical cWW pair | ||
| IL_8B2L_180 | Isolated non-canonical cWW pair | ||
| IL_8B2L_185 | No text annotation | ||
| IL_8B2L_186 | Stack and bulge | ||
| IL_8B2L_187 | Triple non-canonical cWW pairs | ||
| IL_8B2L_189 | No text annotation | ||
| IL_8B2L_196 | Not an internal loop | ||
| IL_8B2L_203 | C-loop with extra cWW pair | ||
| IL_8B2L_206 | Minor groove platform with extra cWW | ||
| IL_8B2L_215 | Stack and bulge | ||
| IL_8B2L_216 | No text annotation | ||
| IL_8B2L_218 | No text annotation | ||
| IL_8B2L_219 | Isolated cWH basepair | ||
| IL_8B2L_220 | Isolated non-canonical cWW pair | ||
| IL_8B2L_222 | Tandem non-canonical cWW pairs | ||
| IL_8B2L_226 | Kink-turn | ||
| IL_8B2L_229 | Isolated non-canonical cWW pair | ||
| IL_8B2L_236 | Intercalated cWW | ||
| IL_8B2L_238 | Tandem non-canonical cWW pairs | ||
| IL_8B2L_242 | Isolated non-canonical cWW pair | ||
| IL_8B2L_245 | Isolated non-canonical cWW pair | ||
| IL_8B2L_246 | No text annotation | ||
| IL_8B2L_313 | Tandem non-canonical cWW pairs | ||
| IL_8B2L_260 | Tandem non-canonical cWW pairs | ||
| IL_8B2L_267 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8B2L_001 | 1/A3/111:121, 1/A3/147:156, 1/A3/260:264 | No text annotation | homologous J3_8C3A_001 NA | |
| J3_8B2L_023 | 1/A3/111:122, 1/A3/142:156, 1/A3/260:264 | No text annotation | ||
| J3_8B2L_024 | 1/A3/183:186, 1/A3/202:211, 1/A3/223:227 | No text annotation | ||
| J3_8B2L_025 | 1/A3/337:353, 1/A3/360:365, 1/B3/24:27 | No text annotation | homologous J3_8P9A_045 NA | |
| J3_8B2L_026 | 1/A3/366:373, 1/A3/400:401, 1/B3/22:23 | No text annotation | geometric J3_5TBW_002 NA | |
| J3_8B2L_027 | 1/A3/366:376, 1/A3/387:401, 1/B3/22:23 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_8B2L_028 | 1/A3/433:440, 1/A3/496:498, 1/A3/628:633 | No text annotation | ||
| J3_8B2L_002 | 1/A3/436:440, 1/A3/496:498, 1/A3/628:632 | No text annotation | ||
| J3_8B2L_003 | 1/A3/506:508, 1/A3/569:579, 1/A3/615:620 | No text annotation | ||
| J3_8B2L_029 | 1/A3/585:586, 1/A3/594:595, 1/A3/607:609 | No text annotation | ||
| J3_8B2L_004 | 1/A3/824:830, 1/A3/915:917, 1/A3/933:936 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_8B2L_030 | 1/A3/839:841, 1/A3/873:877, 1/A3/902:905 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_8B2L_031 | 1/A3/998:999, 1/A3/1074:1078, 1/A3/1104:1109 | No text annotation | ||
| J3_8B2L_006 | 1/A3/1490:1496, 1/A3/1863:1865, 1/A3/1877:1880 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_8B2L_032 | 1/A3/1499:1502, 1/A3/1843:1849, 1/A3/1858:1860 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_8B2L_033 | 1/A3/1537:1542, 1/A3/1596:1600, 1/A3/1617:1618 | No text annotation | homologous J3_8P9A_055 NA | |
| J3_8B2L_008 | 1/A3/1549:1551, 1/A3/1567:1571, 1/A3/1583:1587 | No text annotation | ||
| J3_8B2L_034 | 1/A3/1635:1636, 1/A3/1645:1649, 1/A3/1816:1817 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_8B2L_035 | 1/A3/1658:1662, 1/A3/1797:1798, 1/A3/1802:1807 | No text annotation | homologous J3_8P9A_058 NA | |
| J3_8B2L_009 | 1/A3/2434:2438, 1/A3/2517:2521, 1/A3/2594:2601 | No text annotation | ||
| J3_8B2L_010 | 1/A3/2534:2538, 1/A3/2550:2566, 1/A3/2581:2584 | No text annotation | ||
| J3_8B2L_036 | 1/A3/2654:2656, 1/A3/2757:2768, 1/A3/2796:2801 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_8B2L_011 | 1/A3/2667:2669, 1/A3/2693:2695, 1/A3/2704:2709 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_8B2L_012 | 1/A3/2889:2892, 1/A3/2917:2919, 1/A3/2933:2939 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_8B2L_037 | 1/A3/3167:3174, 1/A3/3206:3217, 1/A3/3254:3273 | No text annotation | ||
| J3_8B2L_013 | 1/A3/3290:3292, 1/A3/3306:3310, 1/A3/3381:3384 | No text annotation | ||
| J3_8B2L_038 | 1/B3/47:48, 1/B3/61:67, 1/B3/99:103 | No text annotation | homologous J3_8C3A_060 NA | |
| J3_8B2L_039 | 1/C3/9:14, 1/C3/65:66, 1/C3/109:110 | No text annotation | homologous J3_8P9A_066 NA | |
| J3_8B2L_040 | 1/h1/41:42, 1/h1/437:443, 1/h1/468:470 | No text annotation | geometric J3_4V88_078 NA | |
| J3_8B2L_041 | 1/h1/41:48, 1/h1/435:443, 1/h1/468:470 | No text annotation | homologous J3_8P9A_069 NA | |
| J3_8B2L_042 | 1/h1/636:639, 1/h1/863:868, 1/h1/968:969 | No text annotation | ||
| J3_8B2L_043 | 1/h1/636:639, 1/h1/863:869, 1/h1/965:969 | No text annotation | ||
| J3_8B2L_014 | 1/h1/764:767, 1/h1/777:779, 1/h1/788:794 | No text annotation | homologous J3_4V88_032 NA | |
| J3_8B2L_044 | 1/h1/884:887, 1/h1/931:939, 1/h1/946:950 | No text annotation | homologous J3_8P9A_074 NA | |
| J3_8B2L_016 | 1/h1/1040:1042, 1/h1/1082:1086, 1/h1/1093:1097 | No text annotation | homologous J3_4V88_034 NA | |
| J3_8B2L_045 | 1/h1/1164:1167, 1/h1/1587:1593, 1/h1/1615:1622 | No text annotation | homologous J3_8P9A_076 NA | |
| J3_8B2L_017 | 1/h1/1171:1174, 1/h1/1473:1475, 1/h1/1580:1583 | No text annotation | homologous J3_4V88_036 NA | |
| J3_8B2L_046 | 1/h1/1183:1190, 1/h1/1201:1212, 1/h1/1459:1463 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_8B2L_047 | 1/h1/1218:1223, 1/h1/1266:1270, 1/h1/1447:1453 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_8B2L_020 | 1/h1/1286:1291, 1/h1/1330:1335, 1/h1/1424:1429 | No text annotation | geometric J3_4V88_039 NA | |
| J3_8B2L_049 | 1/h1/1296:1297, 1/h1/1306:1309, 1/h1/1321:1325 | No text annotation | homologous J3_8P9A_081 NA | |
| J3_8B2L_021 | 1/h1/1339:1341, 1/h1/1391:1394, 1/h1/1417:1420 | No text annotation | homologous J3_8C3A_043 NA | |
| J3_8B2L_050 | 1/h1/1339:1341, 1/h1/1391:1397, 1/h1/1411:1420 | No text annotation | ||
| J3_8B2L_022 | 1/h1/1475:1479, 1/h1/1539:1546, 1/h1/1577:1580 | No text annotation | homologous J3_8C3A_044 NA | |
| J4_8B2L_001 | 1/A3/110:111, 1/A3/264:269, 1/A3/290:296, 1/A3/313:316 | No text annotation | homologous J4_8P9A_012 NA | |
| J4_8B2L_002 | 1/A3/183:186, 1/A3/202:205, 1/A3/209:211, 1/A3/223:227 | No text annotation | ||
| J4_8B2L_003 | 1/A3/1462:1468, 1/A3/1486:1487, 1/A3/1883:1886, 1/A3/2355:2356 | No text annotation | homologous J4_8C3A_003 NA | |
| J4_8B2L_004 | 1/A3/1503:1507, 1/A3/1531:1536, 1/A3/1619:1620, 1/A3/1835:1842 | No text annotation | ||
| J4_8B2L_005 | 1/A3/1506:1507, 1/A3/1531:1536, 1/A3/1619:1620, 1/A3/1835:1841 | No text annotation | ||
| J4_8B2L_006 | 1/A3/1678:1679, 1/A3/1697:1698, 1/A3/1757:1758, 1/A3/1778:1779 | No text annotation | homologous J4_8C3A_005 NA | |
| J4_8B2L_007 | 1/A3/2134:2138, 1/A3/2150:2154, 1/A3/2189:2193, 1/A3/2320:2325 | No text annotation | homologous J4_8C3A_006 NA | |
| J4_8B2L_008 | 1/A3/2195:2197, 1/A3/2251:2252, 1/A3/2270:2279, 1/A3/2313:2318 | No text annotation | homologous J4_8P9A_018 NA | |
| J4_8B2L_009 | 1/A3/2657:2661, 1/A3/2715:2717, 1/A3/2744:2745, 1/A3/2754:2756 | No text annotation | ||
| J4_8B2L_010 | 1/A3/2657:2661, 1/A3/2715:2719, 1/A3/2743:2745, 1/A3/2754:2756 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_8B2L_011 | 1/A3/3012:3014, 1/A3/3044:3045, 1/A3/3100:3102, 1/A3/3136:3138 | No text annotation | homologous J4_8P9A_020 NA | |
| J4_8B2L_012 | 1/W2/7:10, 1/W2/25:27, 1/W2/43:49, 1/W2/65:66 | tRNA junction | homologous J4_5AXM_001 J4_95067.2 | |
| J4_8B2L_013 | 1/h1/100:108, 1/h1/311:313, 1/h1/361:365, 1/h1/387:388 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_8B2L_014 | 1/h1/625:627, 1/h1/978:983, 1/h1/1024:1035, 1/h1/1106:1107 | No text annotation | homologous J4_8P9A_022 NA | |
| J4_8B2L_015 | 1/i2/7:10, 1/i2/25:27, 1/i2/43:49, 1/i2/65:66 | tRNA junction | homologous J4_8VU0_001 J4_95067.2 | |
| J5_8B2L_001 | 1/A3/18:20, 1/B3/38:45, 1/B3/105:110, 1/B3/118:119, 1/B3/142:144 | No text annotation | homologous J5_8C3A_001 NA | |
| J5_8B2L_002 | 1/A3/669:674, 1/A3/809:812, 1/A3/951:954, 1/A3/1387:1388, 1/A3/1442:1448 | No text annotation | homologous J5_8P9A_011 NA | |
| J5_8B2L_003 | 1/A3/686:689, 1/A3/715:719, 1/A3/726:731, 1/A3/759:761, 1/A3/792:797 | No text annotation | ||
| J5_8B2L_004 | 1/A3/1912:1920, 1/A3/1944:1945, 1/A3/2113:2114, 1/A3/2118:2126, 1/A3/2334:2336 | No text annotation | homologous J5_8P9A_013 NA | |
| J5_8B2L_005 | 1/A3/2402:2409, 1/A3/2818:2826, 1/A3/2870:2879, 1/A3/2954:2960, 1/A3/2978:2983 | No text annotation | ||
| J5_8B2L_006 | 1/A3/2419:2422, 1/A3/2614:2617, 1/A3/2630:2631, 1/A3/2653:2654, 1/A3/2801:2807 | No text annotation | homologous J5_8P9A_015 NA | |
| J5_8B2L_007 | 1/h1/31:35, 1/h1/477:483, 1/h1/512:517, 1/h1/546:549, 1/h1/595:598 | No text annotation | homologous J5_8C3A_018 NA | |
| J5_8B2L_008 | 1/h1/31:35, 1/h1/477:483, 1/h1/512:519, 1/h1/539:549, 1/h1/595:598 | No text annotation | ||
| J5_8B2L_009 | 1/h1/54:57, 1/h1/91:98, 1/h1/390:392, 1/h1/413:415, 1/h1/426:430 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_8B2L_010 | 1/h1/127:140, 1/h1/171:182, 1/h1/198:201, 1/h1/266:268, 1/h1/293:295 | No text annotation | ||
| J5_8B2L_011 | 1/h1/127:140, 1/h1/171:182, 1/h1/198:201, 1/h1/266:270, 1/h1/292:295 | No text annotation | ||
| J6_8B2L_001 | 1/A3/20:25, 1/A3/56:66, 1/A3/73:77, 1/A3/104:108, 1/A3/318:328, 1/B3/35:38 | No text annotation | ||
| J6_8B2L_002 | 1/A3/2419:2422, 1/A3/2614:2617, 1/A3/2630:2631, 1/A3/2653:2656, 1/A3/2757:2768, 1/A3/2796:2807 | No text annotation | ||
| J7_8B2L_001 | 1/A3/959:964, 1/A3/977:978, 1/A3/1125:1128, 1/A3/1152:1157, 1/A3/1168:1172, 1/A3/1350:1351, 1/A3/1377:1382 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8B2L_005 | No text annotation | ||
| J3_8B2L_007 | No text annotation | ||
| J3_8B2L_015 | No text annotation | ||
| J3_8B2L_018 | No text annotation | ||
| J3_8B2L_019 | No text annotation | ||
| J3_8B2L_048 | No text annotation |
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