HL_8B2L_009
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGUGAAUUCC
- Length
- 10 nucleotides
- Bulged bases
- 8B2L|1|A3|G|301, 8B2L|1|A3|U|302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8B2L_009 not in the Motif Atlas
- Homologous match to HL_8C3A_009
- Geometric discrepancy: 0.0818
- The information below is about HL_8C3A_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
8B2L|1|A3|G|300
8B2L|1|A3|G|301
8B2L|1|A3|U|302
8B2L|1|A3|G|303
8B2L|1|A3|A|304
8B2L|1|A3|A|305
8B2L|1|A3|U|306
8B2L|1|A3|U|307
8B2L|1|A3|C|308
8B2L|1|A3|C|309
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain F3
- Ribosomal protein L15
- Chain U3
- eL36 (60S ribosomal protein L36)
- Chain Z3
- 60S ribosomal protein L44
- Chain f3
- uL15 (60S ribosomal protein L27a)
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