HL_8B2L_010

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_010 not in the Motif Atlas

Homologous match to HL_8C3A_010

Geometric discrepancy: 0.085

The information below is about HL_8C3A_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8B2L|1|A3|C|354
8B2L|1|A3|G|355
8B2L|1|A3|C|356
8B2L|1|A3|G|357
8B2L|1|A3|A|358
8B2L|1|A3|G|359

Current chains

Chain A3

25S rRNA

Nearby chains

Chain V3

Ribosomal protein L37

Chain X3

60S ribosomal protein L39-3

Chain l3

nascent chain

Chain s3

uL4 (60S ribosomal protein L4)