HL_8B2L_013

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUUUCGAUACG

Length

11 nucleotides

Bulged bases

8B2L|1|A3|G|539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_013 not in the Motif Atlas

Geometric match to HL_5AMQ_001

Geometric discrepancy: 0.2387

The information below is about HL_5AMQ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.4

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

8B2L|1|A3|C|534
8B2L|1|A3|U|535
8B2L|1|A3|U|536
8B2L|1|A3|U|537
8B2L|1|A3|C|538
8B2L|1|A3|G|539
8B2L|1|A3|A|540
8B2L|1|A3|U|541
8B2L|1|A3|A|542
8B2L|1|A3|C|543
8B2L|1|A3|G|544

Current chains

Chain A3

25S rRNA

Nearby chains

Chain E3

60S ribosomal protein L14-1

Chain I3

60S ribosomal protein L18a