HL_8B2L_015

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8B2L|1|A3|U|600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_015 not in the Motif Atlas

Geometric match to HL_4JF2_003

Geometric discrepancy: 0.1364

The information below is about HL_4JF2_003

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.6

Basepair signature

cWW-tSW-F

Number of instances in this motif group

67

Unit IDs

8B2L|1|A3|C|598
8B2L|1|A3|U|599
8B2L|1|A3|U|600
8B2L|1|A3|C|601
8B2L|1|A3|G|602
8B2L|1|A3|G|603

Current chains

Chain A3

25S rRNA

Nearby chains

Chain b3

eL6 (60S ribosomal protein L6)

Chain q3

60S ribosomal protein L7-4-like

Chain s3

uL4 (60S ribosomal protein L4)