HL_8B2L_019

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCUGAG

Length

6 nucleotides

Bulged bases

8B2L|1|A3|A|746

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_019 not in the Motif Atlas

Geometric match to HL_4LFB_004

Geometric discrepancy: 0.2623

The information below is about HL_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.4

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

8B2L|1|A3|C|742
8B2L|1|A3|C|743
8B2L|1|A3|U|744
8B2L|1|A3|G|745
8B2L|1|A3|A|746
8B2L|1|A3|G|747

Current chains

Chain A3

25S rRNA

Nearby chains

Chain J3

60S ribosomal protein L21-1-like

Chain q3

60S ribosomal protein L7-4-like