HL_8B2L_021

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_021 not in the Motif Atlas

Homologous match to HL_5TBW_019

Geometric discrepancy: 0.0795

The information below is about HL_5TBW_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8B2L|1|A3|G|854
8B2L|1|A3|G|855
8B2L|1|A3|A|856
8B2L|1|A3|A|857
8B2L|1|A3|A|858
8B2L|1|A3|C|859

Current chains

Chain A3

25S rRNA

Nearby chains

Chain W1

30S ribosomal protein S15, chloroplastic

Chain a3

60S ribosomal protein L37a

Chain h1

Small subunit ribosomal RNA; SSU rRNA