HL_8B2L_027

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

8B2L|1|A3|G|1142

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_027 not in the Motif Atlas

Geometric match to HL_4V9F_028

Geometric discrepancy: 0.0704

The information below is about HL_4V9F_028

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

8B2L|1|A3|G|1137
8B2L|1|A3|G|1138
8B2L|1|A3|U|1139
8B2L|1|A3|A|1140
8B2L|1|A3|A|1141
8B2L|1|A3|G|1142
8B2L|1|A3|C|1143

Current chains

Chain A3

25S rRNA

Nearby chains

Chain g3

uL16 (60S ribosomal protein L10)