HL_8B2L_030
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CAAGUGCCAGG
- Length
- 11 nucleotides
- Bulged bases
- 8B2L|1|A3|A|1361, 8B2L|1|A3|U|1363, 8B2L|1|A3|C|1366, 8B2L|1|A3|G|1368
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8B2L_030 not in the Motif Atlas
- Geometric match to HL_4OOG_001
- Geometric discrepancy: 0.1213
- The information below is about HL_4OOG_001
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_12626.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 17
Unit IDs
8B2L|1|A3|C|1359
8B2L|1|A3|A|1360
8B2L|1|A3|A|1361
8B2L|1|A3|G|1362
8B2L|1|A3|U|1363
8B2L|1|A3|G|1364
8B2L|1|A3|C|1365
8B2L|1|A3|C|1366
8B2L|1|A3|A|1367
8B2L|1|A3|G|1368
8B2L|1|A3|G|1369
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain G3
- 60S ribosomal protein L18-2-like
- Chain N3
- eL28 (60S ribosomal protein L28)
- Chain q3
- 60S ribosomal protein L7-4-like
- Chain s3
- uL4 (60S ribosomal protein L4)
Coloring options: