HL_8B2L_033

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGGCACUUG

Length

9 nucleotides

Bulged bases

8B2L|1|A3|G|1518, 8B2L|1|A3|U|1522

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_033 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3735

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.2

Basepair signature

cWW-cWW

Number of instances in this motif group

3

Unit IDs

8B2L|1|A3|C|1516
8B2L|1|A3|G|1517
8B2L|1|A3|G|1518
8B2L|1|A3|C|1519
8B2L|1|A3|A|1520
8B2L|1|A3|C|1521
8B2L|1|A3|U|1522
8B2L|1|A3|U|1523
8B2L|1|A3|G|1524

Current chains

Chain A3

25S rRNA

Nearby chains

Chain H3

Ribosomal protein L19

Chain j3

50S ribosomal protein L22, chloroplastic