HL_8B2L_034

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAACC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_034 not in the Motif Atlas

Homologous match to HL_5TBW_033

Geometric discrepancy: 0.1615

The information below is about HL_5TBW_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8B2L|1|A3|G|1555
8B2L|1|A3|G|1556
8B2L|1|A3|A|1557
8B2L|1|A3|A|1558
8B2L|1|A3|C|1559
8B2L|1|A3|C|1560

Current chains

Chain A3

25S rRNA

Nearby chains

Chain F3

Ribosomal protein L15

Chain V3

Ribosomal protein L37