HL_8B2L_035

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUUUC

Length

5 nucleotides

Bulged bases

8B2L|1|A3|U|1577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_035 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2412

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.10

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8B2L|1|A3|G|1575
8B2L|1|A3|U|1576
8B2L|1|A3|U|1577
8B2L|1|A3|U|1578
8B2L|1|A3|C|1579

Current chains

Chain A3

25S rRNA

Nearby chains

Chain k3

60S ribosomal protein L23a