HL_8B2L_036

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUUAAAAUUC

Length

10 nucleotides

Bulged bases

8B2L|1|A3|U|1611, 8B2L|1|A3|U|1612

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_036 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.0765

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8B2L|1|A3|G|1604
8B2L|1|A3|U|1605
8B2L|1|A3|U|1606
8B2L|1|A3|A|1607
8B2L|1|A3|A|1608
8B2L|1|A3|A|1609
8B2L|1|A3|A|1610
8B2L|1|A3|U|1611
8B2L|1|A3|U|1612
8B2L|1|A3|C|1613

Current chains

Chain A3

25S rRNA

Nearby chains

Chain H3

Ribosomal protein L19

Chain T3

60S ribosomal protein L34

Chain k3

60S ribosomal protein L23a