HL_8B2L_037

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_037 not in the Motif Atlas

Homologous match to HL_8C3A_036

Geometric discrepancy: 0.0648

The information below is about HL_8C3A_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8B2L|1|A3|G|1638
8B2L|1|A3|G|1639
8B2L|1|A3|C|1640
8B2L|1|A3|A|1641
8B2L|1|A3|A|1642
8B2L|1|A3|C|1643

Current chains

Chain A3

25S rRNA

Nearby chains

Chain M3

eL27 (60S ribosomal protein L27)

Chain T3

60S ribosomal protein L34