HL_8B2L_051

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8B2L|1|A3|A|2375, 8B2L|1|A3|A|2376, 8B2L|1|A3|C|2377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_051 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0521

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8B2L|1|A3|G|2372
8B2L|1|A3|G|2373
8B2L|1|A3|G|2374
8B2L|1|A3|A|2375
8B2L|1|A3|A|2376
8B2L|1|A3|C|2377
8B2L|1|A3|G|2378
8B2L|1|A3|G|2379
8B2L|1|A3|G|2380
8B2L|1|A3|C|2381

Current chains

Chain A3

25S rRNA

Nearby chains

Chain R3

60S ribosomal protein L32-1

Chain d3

uL13 (60S ribosomal protein L13a)

Chain r3

uL3 (60S ribosomal protein L3)