HL_8B2L_054

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

8B2L|1|A3|G|2621

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_054 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.0963

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8B2L|1|A3|C|2619
8B2L|1|A3|U|2620
8B2L|1|A3|G|2621
8B2L|1|A3|OMG|2622
8B2L|1|A3|G|2623
8B2L|1|A3|G|2624
8B2L|1|A3|C|2625
8B2L|1|A3|G|2626
8B2L|1|A3|G|2627

Current chains

Chain A3

25S rRNA

Nearby chains

Chain O3

60S ribosomal protein L29

Chain g3

uL16 (60S ribosomal protein L10)

Chain i2

Transfer RNA; tRNA