HL_8B2L_056

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_056 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.1575

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8B2L|1|A3|A|2676
8B2L|1|A3|A|2677
8B2L|1|A3|C|2678
8B2L|1|A3|A|2679
8B2L|1|A3|G|2680
8B2L|1|A3|A|2681
8B2L|1|A3|A|2682
8B2L|1|A3|A|2683
8B2L|1|A3|U|2684

Current chains

Chain A3

25S rRNA

Nearby chains

Chain i2

Transfer RNA; tRNA

Chain t3

uL5 (60S ribosomal protein L11)