HL_8B2L_057

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_057 not in the Motif Atlas

Homologous match to HL_8C3A_058

Geometric discrepancy: 0.0985

The information below is about HL_8C3A_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

8B2L|1|A3|C|2696
8B2L|1|A3|A|2697
8B2L|1|A3|G|2698
8B2L|1|A3|A|2699
8B2L|1|A3|A|2700
8B2L|1|A3|G|2701
8B2L|1|A3|G|2702
8B2L|1|A3|G|2703

Current chains

Chain A3

25S rRNA

Nearby chains

Chain J3

60S ribosomal protein L21-1-like

Chain Z3

60S ribosomal protein L44

Chain g3

uL16 (60S ribosomal protein L10)