HL_8B2L_059

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

G(PSU)GAAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_059 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3767

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8B2L|1|A3|G|2746
8B2L|1|A3|PSU|2747
8B2L|1|A3|G|2748
8B2L|1|A3|A|2749
8B2L|1|A3|A|2750
8B2L|1|A3|A|2751
8B2L|1|A3|G|2752
8B2L|1|A3|C|2753

Current chains

Chain A3

25S rRNA

Nearby chains

Chain J3

60S ribosomal protein L21-1-like

Chain Z3

60S ribosomal protein L44

Chain h3

60S ribosomal protein L5-like