HL_8B2L_063

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

U(OMU)(OMG)(PSU)UCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMG, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_063 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.3222

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.10

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8B2L|1|A3|U|2923
8B2L|1|A3|OMU|2924
8B2L|1|A3|OMG|2925
8B2L|1|A3|PSU|2926
8B2L|1|A3|U|2927
8B2L|1|A3|C|2928
8B2L|1|A3|A|2929

Current chains

Chain A3

25S rRNA

Nearby chains

Chain r3

uL3 (60S ribosomal protein L3)