HL_8B2L_064

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_064 not in the Motif Atlas

Homologous match to HL_8C3A_065

Geometric discrepancy: 0.0664

The information below is about HL_8C3A_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8B2L|1|A3|C|2966
8B2L|1|A3|G|2967
8B2L|1|A3|U|2968
8B2L|1|A3|G|2969
8B2L|1|A3|A|2970
8B2L|1|A3|G|2971

Current chains

Chain A3

25S rRNA

Nearby chains

Chain o3

uL2 (60S ribosomal protein L8)