HL_8B2L_065

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_065 not in the Motif Atlas

Geometric match to HL_7A0S_063

Geometric discrepancy: 0.0942

The information below is about HL_7A0S_063

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

8B2L|1|A3|C|3027
8B2L|1|A3|G|3028
8B2L|1|A3|A|3029
8B2L|1|A3|G|3030
8B2L|1|A3|A|3031
8B2L|1|A3|G|3032

Current chains

Chain A3

25S rRNA

Nearby chains

Chain u3

uL6 (60S ribosomal protein L9)