HL_8B2L_067

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8B2L|1|A3|G|3118, 8B2L|1|A3|C|3122

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_067 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1756

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8B2L|1|A3|C|3112
8B2L|1|A3|PSU|3113
8B2L|1|A3|G|3114
8B2L|1|A3|A|3115
8B2L|1|A3|A|3116
8B2L|1|A3|C|3117
8B2L|1|A3|G|3118
8B2L|1|A3|C|3119
8B2L|1|A3|C|3120
8B2L|1|A3|U|3121
8B2L|1|A3|C|3122
8B2L|1|A3|U|3123
8B2L|1|A3|A|3124
8B2L|1|A3|A|3125
8B2L|1|A3|G|3126

Current chains

Chain A3

25S rRNA

Nearby chains

Chain Y3

ubiquitin-60S ribosomal protein L40

Chain d3

uL13 (60S ribosomal protein L13a)

Chain u3

uL6 (60S ribosomal protein L9)