HL_8B2L_070

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCAGACGAC

Length

9 nucleotides

Bulged bases

8B2L|1|A3|C|3296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_070 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.0638

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

8B2L|1|A3|G|3295
8B2L|1|A3|C|3296
8B2L|1|A3|A|3297
8B2L|1|A3|G|3298
8B2L|1|A3|A|3299
8B2L|1|A3|C|3300
8B2L|1|A3|G|3301
8B2L|1|A3|A|3302
8B2L|1|A3|C|3303

Current chains

Chain A3

25S rRNA

Nearby chains

Chain j3

50S ribosomal protein L22, chloroplastic

Chain r3

uL3 (60S ribosomal protein L3)