HL_8B2L_072
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UGAAU(PSU)(OMG)CAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 8B2L|1|B3|U|85, 8B2L|1|B3|C|87, 8B2L|1|B3|U|89
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8B2L_072 not in the Motif Atlas
- Homologous match to HL_8P9A_187
- Geometric discrepancy: 0.5082
- The information below is about HL_8P9A_187
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68571.1
- Basepair signature
- cWW-tSH-tHS-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8B2L|1|B3|U|72
8B2L|1|B3|G|73
8B2L|1|B3|A|74
8B2L|1|B3|A|75
8B2L|1|B3|U|76
8B2L|1|B3|PSU|77
8B2L|1|B3|OMG|78
8B2L|1|B3|C|79
8B2L|1|B3|A|80
8B2L|1|B3|G|81
8B2L|1|B3|A|82
8B2L|1|B3|A|83
8B2L|1|B3|U|84
8B2L|1|B3|U|85
8B2L|1|B3|C|86
8B2L|1|B3|C|87
8B2L|1|B3|G|88
8B2L|1|B3|U|89
8B2L|1|B3|G|90
8B2L|1|B3|A|91
8B2L|1|B3|A|92
Current chains
- Chain B3
- 5.8S rRNA
Nearby chains
- Chain A3
- Large subunit ribosomal RNA; LSU rRNA
- Chain V3
- Ribosomal protein L37
- Chain X3
- 60S ribosomal protein L39-3
- Chain m3
- uL24 (60S ribosomal protein L26)
- Chain n3
- 60S ribosomal protein L35-like
Coloring options: