HL_8B2L_083

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UUCUG

Length

5 nucleotides

Bulged bases

8B2L|1|h1|U|189, 8B2L|1|h1|U|191

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_083 not in the Motif Atlas

Geometric match to HL_4V88_192

Geometric discrepancy: 0.2296

The information below is about HL_4V88_192

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

8B2L|1|h1|U|188
8B2L|1|h1|U|189
8B2L|1|h1|C|190
8B2L|1|h1|U|191
8B2L|1|h1|G|192

Current chains

Chain h1

18S rRNA

Nearby chains

Chain P1

40S ribosomal protein S8