HL_8B2L_084

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AGAUAUGC(OMG)AUGAUUCAU

Length

18 nucleotides

Bulged bases

8B2L|1|h1|A|214, 8B2L|1|h1|U|243, 8B2L|1|h1|U|252

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8B2L|1|h1|A|210
8B2L|1|h1|G|211
8B2L|1|h1|A|212
8B2L|1|h1|U|213
8B2L|1|h1|A|214
8B2L|1|h1|U|243
8B2L|1|h1|G|244
8B2L|1|h1|C|245
8B2L|1|h1|OMG|246
8B2L|1|h1|A|247
8B2L|1|h1|U|248
8B2L|1|h1|G|249
8B2L|1|h1|A|250
8B2L|1|h1|U|251
8B2L|1|h1|U|252
8B2L|1|h1|C|253
8B2L|1|h1|A|254
8B2L|1|h1|U|255

Current chains

Chain h1

18S rRNA

Nearby chains

Chain A1

40S ribosomal protein S4

Chain X1

40S ribosomal protein S11-like

Chain k1

40S ribosomal protein S6