HL_8B2L_091

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AAUCUAAAUCCCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_091 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.1378

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8B2L|1|h1|A|523
8B2L|1|h1|A|524
8B2L|1|h1|U|525
8B2L|1|h1|C|526
8B2L|1|h1|U|527
8B2L|1|h1|A|528
8B2L|1|h1|A|529
8B2L|1|h1|A|530
8B2L|1|h1|U|531
8B2L|1|h1|C|532
8B2L|1|h1|C|533
8B2L|1|h1|C|534
8B2L|1|h1|U|535

Current chains

Chain h1

18S rRNA

Nearby chains

Chain H1

40S ribosomal protein S24

Chain b1

40S ribosomal protein S9-2-like