HL_8B2L_093

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGCUCAAAG

Length

9 nucleotides

Bulged bases

8B2L|1|h1|G|769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_093 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.1814

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8B2L|1|h1|U|768
8B2L|1|h1|G|769
8B2L|1|h1|C|770
8B2L|1|h1|U|771
8B2L|1|h1|C|772
8B2L|1|h1|A|773
8B2L|1|h1|A|774
8B2L|1|h1|A|775
8B2L|1|h1|G|776

Current chains

Chain h1

18S rRNA

Nearby chains

Chain A1

40S ribosomal protein S4

Chain H1

40S ribosomal protein S24

Chain b1

40S ribosomal protein S9-2-like