HL_8B2L_094

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCUACG

Length

6 nucleotides

Bulged bases

8B2L|1|h1|C|785

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_094 not in the Motif Atlas

Homologous match to HL_4V88_204

Geometric discrepancy: 0.5432

The information below is about HL_4V88_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.1

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

8B2L|1|h1|C|781
8B2L|1|h1|C|782
8B2L|1|h1|U|783
8B2L|1|h1|A|784
8B2L|1|h1|C|785
8B2L|1|h1|G|786

Current chains

Chain h1

18S rRNA

Nearby chains

Chain H1

40S ribosomal protein S24