HL_8B2L_095

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UAUUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_095 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2015

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8B2L|1|h1|U|831
8B2L|1|h1|A|832
8B2L|1|h1|U|833
8B2L|1|h1|U|834
8B2L|1|h1|U|845
8B2L|1|h1|C|846
8B2L|1|h1|G|847

Current chains

Chain h1

18S rRNA

Nearby chains

Chain X1

40S ribosomal protein S11-like