HL_8B2L_107

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUUUUAG

Length

7 nucleotides

Bulged bases

8B2L|1|h1|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_107 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.235

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

8B2L|1|h1|C|1401
8B2L|1|h1|U|1402
8B2L|1|h1|U|1403
8B2L|1|h1|U|1404
8B2L|1|h1|U|1405
8B2L|1|h1|A|1406
8B2L|1|h1|G|1407

Current chains

Chain h1

18S rRNA

Nearby chains

Chain D1

40S ribosomal protein S17-like