HL_8B2L_109

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAUUGCAAUUGU(PSU)G

Length

14 nucleotides

Bulged bases

8B2L|1|h1|G|1565

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8B2L|1|h1|C|1555
8B2L|1|h1|A|1556
8B2L|1|h1|U|1557
8B2L|1|h1|U|1558
8B2L|1|h1|G|1559
8B2L|1|h1|C|1560
8B2L|1|h1|A|1561
8B2L|1|h1|A|1562
8B2L|1|h1|U|1563
8B2L|1|h1|U|1564
8B2L|1|h1|G|1565
8B2L|1|h1|U|1566
8B2L|1|h1|PSU|1567
8B2L|1|h1|G|1568

Current chains

Chain h1

18S rRNA

Nearby chains

Chain E1

40S ribosomal protein S19-3

Chain U1

40S ribosomal protein S18

Chain V1

40S ribosomal protein S29

Chain Y1

40S ribosomal protein S15-like