HL_8B2L_110
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUCAUCAGC
- Length
- 9 nucleotides
- Bulged bases
- 8B2L|1|h1|G|1607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8B2L_110 not in the Motif Atlas
- Homologous match to HL_4V88_220
- Geometric discrepancy: 0.2045
- The information below is about HL_4V88_220
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8B2L|1|h1|G|1600
8B2L|1|h1|U|1601
8B2L|1|h1|C|1602
8B2L|1|h1|A|1603
8B2L|1|h1|U|1604
8B2L|1|h1|C|1605
8B2L|1|h1|A|1606
8B2L|1|h1|G|1607
8B2L|1|h1|C|1608
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain E1
- 40S ribosomal protein S19-3
- Chain R1
- 40S ribosomal protein S20-2
- Chain V1
- 40S ribosomal protein S29
- Chain f1
- 40S ribosomal protein S16
Coloring options: