HL_8B2L_120

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

(A2M)GAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_120 not in the Motif Atlas

Homologous match to HL_8P9A_159

Geometric discrepancy: 0.102

The information below is about HL_8P9A_159

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

8B2L|1|A3|A2M|2223
8B2L|1|A3|G|2224
8B2L|1|A3|A|2225
8B2L|1|A3|A|2226
8B2L|1|A3|A|2227
8B2L|1|A3|U|2228

Current chains

Chain A3

25S rRNA

Nearby chains

Chain U3

eL36 (60S ribosomal protein L36)

Chain Z3

60S ribosomal protein L44